Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV41019
         (639 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha...   130   1e-31
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar...   130   1e-31
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    29   0.43 
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|...    27   1.7  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    27   2.3  
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom...    27   3.0  
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    25   7.0  
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe...    25   9.2  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   9.2  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    25   9.2  

>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score =  130 bits (315), Expect = 1e-31
 Identities = 60/83 (72%), Positives = 69/83 (83%)
 Frame = +2

Query: 5   HKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWG 184
           HKR ATG KRA  RKKRK+ELGR  +NTR+GP+RIH VR RGGN K+RALRLD+GNFSWG
Sbjct: 9   HKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRLDSGNFSWG 68

Query: 185 SECSTRKTRIIDVVYNASNNELV 253
           SE  ++KTRII V Y+ SNNELV
Sbjct: 69  SEGVSKKTRIIQVAYHPSNNELV 91



 Score = 68.9 bits (161), Expect = 6e-13
 Identities = 39/84 (46%), Positives = 50/84 (59%)
 Frame = +1

Query: 256 TKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLAR 435
           T TL K+AIV +DA PFR WYE+HY + +G  KG K T          +S+   RK+ AR
Sbjct: 93  TNTLTKSAIVQIDAAPFRVWYETHYGILMG-SKGKKATSTP-----NPKSKHVQRKHSAR 146

Query: 436 QRLAKVEGALEEQFHTGRLLACVA 507
              +KV+ ALE QF  GRL A V+
Sbjct: 147 LGDSKVDSALETQFAAGRLYAVVS 170



 Score = 49.2 bits (112), Expect = 5e-07
 Identities = 21/38 (55%), Positives = 26/38 (68%)
 Frame = +3

Query: 483 GAFAGLRGDRPGQCGRADGYILEGKELEFYLRKIKSKR 596
           G    +   RPGQ GR DGYILEG+EL FYLR++  K+
Sbjct: 163 GRLYAVVSSRPGQSGRCDGYILEGEELHFYLRRMAPKK 200


>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score =  130 bits (315), Expect = 1e-31
 Identities = 60/83 (72%), Positives = 69/83 (83%)
 Frame = +2

Query: 5   HKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWG 184
           HKR ATG KRA  RKKRK+ELGR  +NTR+GP+RIH VR RGGN K+RALRLD+GNFSWG
Sbjct: 9   HKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRLDSGNFSWG 68

Query: 185 SECSTRKTRIIDVVYNASNNELV 253
           SE  ++KTRII V Y+ SNNELV
Sbjct: 69  SEGVSKKTRIIQVAYHPSNNELV 91



 Score = 68.1 bits (159), Expect = 1e-12
 Identities = 39/84 (46%), Positives = 50/84 (59%)
 Frame = +1

Query: 256 TKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLAR 435
           T TL K+AIV +DA PFR WYE+HY + +G  KG K T          +S+   RK+ AR
Sbjct: 93  TNTLTKSAIVQIDAAPFRVWYETHYGILMG-SKGKKATATP-----TPKSKHVQRKHSAR 146

Query: 436 QRLAKVEGALEEQFHTGRLLACVA 507
              +KV+ ALE QF  GRL A V+
Sbjct: 147 LGDSKVDSALETQFAAGRLYAVVS 170



 Score = 49.2 bits (112), Expect = 5e-07
 Identities = 21/38 (55%), Positives = 26/38 (68%)
 Frame = +3

Query: 483 GAFAGLRGDRPGQCGRADGYILEGKELEFYLRKIKSKR 596
           G    +   RPGQ GR DGYILEG+EL FYLR++  K+
Sbjct: 163 GRLYAVVSSRPGQSGRCDGYILEGEELHFYLRRMAPKK 200


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 29.5 bits (63), Expect = 0.43
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 201 AKPVSLMLCIMHLTMNWCYKDPCQECNCCSRCNS 302
           +KPVSL +    +T NW  +     CN C   N+
Sbjct: 295 SKPVSLCVYPEKITFNWLTEGTVDSCNLCKLSNT 328


>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 207

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = +2

Query: 2   WHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALR 157
           W K   T  K+    +KRK  L R A   RL  + + S+ S+GG    +A +
Sbjct: 34  WSKGVKTN-KKEQEAEKRKAALERKAERERLEKEEMESLPSKGGKGSKKAAK 84


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
            Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +2

Query: 62   ELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRI 214
            EL    +N  +  Q+   + S    T YRA+ LDTG+     E +  K RI
Sbjct: 1108 ELASSKSNITIRWQQGGLIGSGSFGTVYRAVNLDTGDLMAVKEVALHKPRI 1158


>SPCC132.01c ||SPCC1322.17c|DUF814 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1021

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 16/68 (23%), Positives = 31/68 (45%)
 Frame = +1

Query: 295 ATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQ 474
           +TP     + H       KKG+K+  A++    ++R  + AR+  A +   K   ++E+ 
Sbjct: 754 STPDTTGSDIHIVSEKRGKKGSKVITAKKVSAKERREARRARRQTALEESLKAPISIEDA 813

Query: 475 FHTGRLLA 498
                +LA
Sbjct: 814 TDPQTILA 821


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 240 LDALYTTSMIRVLRVEHSDPQEKLPVSRR 154
           L+ + T S  +V R  H DP  KLP  RR
Sbjct: 193 LEGVKTKSGRKVHRPNHFDPLVKLPTRRR 221


>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = -2

Query: 305 NGVASTTTIAFLTRVFVAPIHC*MHYTQHQ*YGFCELNIP 186
           NG + T  +     + V P+   + +   Q +G  ++NIP
Sbjct: 496 NGTSETNVLNLNDSLLVDPVSLYVEWAMQQDWGLIDINIP 535


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 87  PGSVLSVSTPFVHVVEILSTVRCVWTPVTSLG 182
           P  VLS   P++  +  L +  C+W P   LG
Sbjct: 682 PILVLSTMKPYLCNITFLGSHLCIWQPKILLG 713


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -2

Query: 533 GATTLTWAIATQASKRPVWNCSSRAPS 453
           G+ T  W      SK P WN  SR P+
Sbjct: 833 GSRTPAW---NSGSKTPAWNSGSRTPA 856


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,421,417
Number of Sequences: 5004
Number of extensions: 46377
Number of successful extensions: 141
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)