Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV41019
(639 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0270 + 17135464-17135467,17135583-17135655,17136253-171365... 129 2e-30
04_03_0510 - 16659486-16659564,16659772-16659947,16660464-166607... 129 2e-30
07_01_0467 - 3524598-3524837,3524939-3525466,3526242-3526892,352... 33 0.25
11_06_0744 - 26850761-26850771,26850794-26850861,26851464-26851861 29 2.4
04_04_0799 + 28143878-28145042,28145127-28145290,28146008-281460... 29 3.1
04_03_0867 - 20414999-20415160,20415255-20415384,20415515-204157... 29 4.1
04_03_0549 - 17043135-17043351,17043641-17043846 29 4.1
03_02_0259 - 6920472-6920579,6920744-6921022,6921115-6921390,692... 28 5.4
02_05_0217 - 26842625-26842790,26842985-26843136,26843264-268433... 28 5.4
01_06_0095 - 26395104-26395871,26396040-26396486 28 5.4
03_02_0260 - 6924532-6924757,6925443-6925546,6925729-6926007,692... 28 7.2
>02_03_0270 +
17135464-17135467,17135583-17135655,17136253-17136583,
17136916-17136969,17137219-17137394,17137607-17137685
Length = 238
Score = 129 bits (312), Expect = 2e-30
Identities = 62/84 (73%), Positives = 69/84 (82%), Gaps = 1/84 (1%)
Frame = +2
Query: 5 HKRRATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDTGNFSW 181
HKRRATGGK+ RKKRKYELGR ANT+L + + VR RGGN K+RALRLDTGN+SW
Sbjct: 9 HKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRLDTGNYSW 68
Query: 182 GSECSTRKTRIIDVVYNASNNELV 253
GSE TRKTRI+DVVYNASNNELV
Sbjct: 69 GSEAVTRKTRILDVVYNASNNELV 92
Score = 63.7 bits (148), Expect = 1e-10
Identities = 42/109 (38%), Positives = 57/109 (52%), Gaps = 25/109 (22%)
Frame = +1
Query: 256 TKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGA------------------------- 360
T+TLVK+AIV VDA PF+QWY +HY + +GRKK A
Sbjct: 94 TQTLVKSAIVQVDAAPFKQWYLTHYGVDIGRKKKAPAAKKDAEHALGKIRCLFIGLYVML 153
Query: 361 KLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVA 507
K +AE K+S RK RQ+ ++ +EEQF +GRLLAC++
Sbjct: 154 KGQDAEATTEEAKKSNHVVRKLEKRQQGRTLDAHIEEQFGSGRLLACIS 202
Score = 60.5 bits (140), Expect = 1e-09
Identities = 24/31 (77%), Positives = 29/31 (93%)
Frame = +3
Query: 510 RPGQCGRADGYILEGKELEFYLRKIKSKRAK 602
RPGQCGRADGYILEGKELEFY++K++ K+ K
Sbjct: 204 RPGQCGRADGYILEGKELEFYMKKLQRKKGK 234
>04_03_0510 -
16659486-16659564,16659772-16659947,16660464-16660797,
16661564-16661636,16661780-16661783
Length = 221
Score = 129 bits (311), Expect = 2e-30
Identities = 62/84 (73%), Positives = 69/84 (82%), Gaps = 1/84 (1%)
Frame = +2
Query: 5 HKRRATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDTGNFSW 181
HKRRATGGK+ RKKRKYELGR ANT+L + + VR RGGN K+RALRLDTGN+SW
Sbjct: 9 HKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNLKWRALRLDTGNYSW 68
Query: 182 GSECSTRKTRIIDVVYNASNNELV 253
GSE TRKTRI+DVVYNASNNELV
Sbjct: 69 GSEAVTRKTRILDVVYNASNNELV 92
Score = 79.0 bits (186), Expect = 3e-15
Identities = 42/92 (45%), Positives = 57/92 (61%), Gaps = 8/92 (8%)
Frame = +1
Query: 256 TKTLVKNAIVVVDATPFRQWYESHYTLPLGRKK--------GAKLTEAEEAIINKKRSQK 411
T+TLVK+AIV VDA PF+QWY +HY + +GRKK A+ E E A K+S
Sbjct: 94 TQTLVKSAIVQVDAAPFKQWYLTHYGVDIGRKKKAPAAKKDAAEGQEGEAATEEAKKSNH 153
Query: 412 TARKYLARQRLAKVEGALEEQFHTGRLLACVA 507
RK RQ+ ++ +EEQF +GRLLAC++
Sbjct: 154 VVRKLEKRQQTRTLDSHIEEQFGSGRLLACIS 185
Score = 60.5 bits (140), Expect = 1e-09
Identities = 24/31 (77%), Positives = 29/31 (93%)
Frame = +3
Query: 510 RPGQCGRADGYILEGKELEFYLRKIKSKRAK 602
RPGQCGRADGYILEGKELEFY++K++ K+ K
Sbjct: 187 RPGQCGRADGYILEGKELEFYMKKLQRKKGK 217
>07_01_0467 -
3524598-3524837,3524939-3525466,3526242-3526892,
3527015-3527500,3527580-3527792,3527885-3528174,
3528276-3528418,3528633-3528855,3528983-3529160,
3529598-3529867
Length = 1073
Score = 32.7 bits (71), Expect = 0.25
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Frame = +2
Query: 53 RKYELGRPAANTRLGPQRIHSVRSR----GGNTKYRALRLDTGN-FSWGS 187
R+ +LG P+ +T+ P+R+ S+++R K+ A DTG F+WGS
Sbjct: 271 REGQLGYPSVDTQPTPRRVSSLKARIISVAAANKHSAAVADTGEVFTWGS 320
>11_06_0744 - 26850761-26850771,26850794-26850861,26851464-26851861
Length = 158
Score = 29.5 bits (63), Expect = 2.4
Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = +2
Query: 8 KRRATGGKRAPIRKKRKYELGRPAA---NTRLGPQRIHSVRSRGGNTKYRALR 157
KRR GG+RA R+K + E GR A R G R R RGG + R R
Sbjct: 81 KRRRGGGRRAAGRRKEEEEAGRRKAGEETRRRGAGR--RKRRRGGRRRRRRRR 131
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = +2
Query: 8 KRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTK 142
KRR GG+RA R+K + E GR A R RGG +
Sbjct: 45 KRRRGGGRRAAGRRKEEEEAGRRKAGEEARRGAGKRKRRRGGGRR 89
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +2
Query: 8 KRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTK 142
+RR GG+RA R+K + E GR A R RGG +
Sbjct: 9 RRRRGGGRRAAGRRKEEEEAGRRKAGEEARRGAGKRKRRRGGGRR 53
>04_04_0799 +
28143878-28145042,28145127-28145290,28146008-28146070,
28146268-28146491,28146850-28147555
Length = 773
Score = 29.1 bits (62), Expect = 3.1
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +1
Query: 352 KGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHT-GRLLACVAIAQVSVV 528
KG+KL + E + + R++ A R LA GAL + H+ L + + Q+
Sbjct: 4 KGSKLEDQEAVALCRGRAELLAAAVRHRYALADAHGALADSLHSMAAPLHRLLLLQLQAS 63
Query: 529 APMVT 543
+P +T
Sbjct: 64 SPQLT 68
>04_03_0867 -
20414999-20415160,20415255-20415384,20415515-20415702,
20415967-20416001,20416363-20416579,20416737-20416820,
20417609-20417875,20417954-20418061,20418163-20418249,
20418629-20419399
Length = 682
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = +3
Query: 90 GSVLSVSTPFVHVVEILSTVRCVWTPVTSLGDRNVQLAKPVSLMLCIMHLTMN 248
G + P + VV + + C+W + SLG R Q++K + L ++ + +N
Sbjct: 270 GHQMVTINPLLSVVAA-TVIPCMWLVIASLGRRLRQISKEAHISLAMLTVYLN 321
>04_03_0549 - 17043135-17043351,17043641-17043846
Length = 140
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/71 (25%), Positives = 37/71 (52%)
Frame = -1
Query: 330 IMRLIPLPEWSCIYYNNCILDKGLCSTNSLLDALYTTSMIRVLRVEHSDPQEKLPVSRRS 151
++ L+ +P+WS +YY N +DK L + S++ A + R ++ + KL + +
Sbjct: 72 LILLLLVPKWSIVYYLNSKIDKKLYNW-SMIGAALNDAWNRYVQKDRRHKAGKLKLGHK- 129
Query: 150 ARYLVFPPRER 118
+ FP R++
Sbjct: 130 ---IDFPVRQQ 137
>03_02_0259 -
6920472-6920579,6920744-6921022,6921115-6921390,
6921473-6921691,6921795-6921963,6922248-6922422,
6922490-6922601,6923343-6923573
Length = 522
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = -2
Query: 326 CDSYHCLNGVASTTTIAFLTRVFVAPIHC*MHYTQHQ*YGFCELNIPIP 180
C Y L GV S IA L+ + P+ H+ YG L +P+P
Sbjct: 426 CFDYLSLGGVFSNGPIALLSGLNPRPLSLVAHFFAVAIYGVGRLMLPVP 474
>02_05_0217 -
26842625-26842790,26842985-26843136,26843264-26843307,
26843828-26843930,26844007-26844186
Length = 214
Score = 28.3 bits (60), Expect = 5.4
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = -1
Query: 558 LCLLRCNHRRDHTDLGDRHASQQTPRV 478
LC++ C R DH + D+++S+++ V
Sbjct: 32 LCIISCEARHDHLRISDKYSSKKSSLV 58
>01_06_0095 - 26395104-26395871,26396040-26396486
Length = 404
Score = 28.3 bits (60), Expect = 5.4
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Frame = +3
Query: 384 YYQQEEKSKDSKKILGKATSC*G*GCSRRAIPHGAFAGLRGDRPGQCGR-----ADGYIL 548
YY Q + + K + S G R P F D+ G C R ++ ++
Sbjct: 260 YYSQRRAWRVALKAINDLESLRGRVIVRMLSPMSHFENGTWDQGGNCKRTQPLRSNETVM 319
Query: 549 EGKELEFYLRKIKSKRA 599
EG++L FY +++ RA
Sbjct: 320 EGRDLHFYTAQMEEYRA 336
>03_02_0260 -
6924532-6924757,6925443-6925546,6925729-6926007,
6926093-6926368,6926460-6926678,6926758-6926926,
6927208-6927382,6927489-6927600,6929566-6929820
Length = 604
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = -2
Query: 326 CDSYHCLNGVASTTTIAFLTRVFVAPIHC*MHYTQHQ*YGFCELNIPIP 180
C Y L GV S IA L+ + P+ H+ YG L +P+P
Sbjct: 434 CFDYLSLGGVFSNGPIALLSGLNPRPLSLVAHFFAVAIYGVGRLMLPLP 482
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,648,747
Number of Sequences: 37544
Number of extensions: 336945
Number of successful extensions: 1108
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1105
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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