Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV41019
(639 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8 prot... 161 1e-39
BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8 pr... 161 1e-39
AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8 pr... 161 1e-39
AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8 pr... 161 1e-39
AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8 pr... 127 3e-29
BC005678-1|AAH05678.1| 80|Homo sapiens Similar to ribosomal pr... 64 4e-10
CR457284-1|CAG33565.1| 201|Homo sapiens FLJ11749 protein. 31 4.6
BC010108-1|AAH10108.1| 201|Homo sapiens chromatin modifying pro... 31 4.6
AY329087-1|AAQ91196.1| 201|Homo sapiens VPS20 protein. 31 4.6
AK021811-1|BAB13901.1| 201|Homo sapiens protein ( Homo sapiens ... 31 4.6
>X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 161 bits (392), Expect = 1e-39
Identities = 72/84 (85%), Positives = 76/84 (90%)
Frame = +2
Query: 2 WHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSW 181
WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRLD GNFSW
Sbjct: 8 WHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSW 67
Query: 182 GSECSTRKTRIIDVVYNASNNELV 253
GSEC TRKTRIIDVVYNASNNELV
Sbjct: 68 GSECCTRKTRIIDVVYNASNNELV 91
Score = 127 bits (307), Expect = 3e-29
Identities = 57/84 (67%), Positives = 69/84 (82%)
Frame = +1
Query: 256 TKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLAR 435
TKTLVKN IV++D+TP+RQWYESHY LPLGRKKGAKLT EE I+NKKRS+K +KY R
Sbjct: 93 TKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDER 152
Query: 436 QRLAKVEGALEEQFHTGRLLACVA 507
++ AK+ LEEQF G+LLAC+A
Sbjct: 153 KKNAKISSLLEEQFQQGKLLACIA 176
Score = 64.1 bits (149), Expect = 4e-10
Identities = 26/31 (83%), Positives = 30/31 (96%)
Frame = +3
Query: 510 RPGQCGRADGYILEGKELEFYLRKIKSKRAK 602
RPGQCGRADGY+LEGKELEFYLRKIK+++ K
Sbjct: 178 RPGQCGRADGYVLEGKELEFYLRKIKARKGK 208
>BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 161 bits (392), Expect = 1e-39
Identities = 72/84 (85%), Positives = 76/84 (90%)
Frame = +2
Query: 2 WHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSW 181
WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRLD GNFSW
Sbjct: 8 WHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSW 67
Query: 182 GSECSTRKTRIIDVVYNASNNELV 253
GSEC TRKTRIIDVVYNASNNELV
Sbjct: 68 GSECCTRKTRIIDVVYNASNNELV 91
Score = 127 bits (307), Expect = 3e-29
Identities = 57/84 (67%), Positives = 69/84 (82%)
Frame = +1
Query: 256 TKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLAR 435
TKTLVKN IV++D+TP+RQWYESHY LPLGRKKGAKLT EE I+NKKRS+K +KY R
Sbjct: 93 TKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDER 152
Query: 436 QRLAKVEGALEEQFHTGRLLACVA 507
++ AK+ LEEQF G+LLAC+A
Sbjct: 153 KKNAKISSLLEEQFQQGKLLACIA 176
Score = 64.1 bits (149), Expect = 4e-10
Identities = 26/31 (83%), Positives = 30/31 (96%)
Frame = +3
Query: 510 RPGQCGRADGYILEGKELEFYLRKIKSKRAK 602
RPGQCGRADGY+LEGKELEFYLRKIK+++ K
Sbjct: 178 RPGQCGRADGYVLEGKELEFYLRKIKARKGK 208
>AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 161 bits (392), Expect = 1e-39
Identities = 72/84 (85%), Positives = 76/84 (90%)
Frame = +2
Query: 2 WHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSW 181
WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRLD GNFSW
Sbjct: 8 WHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSW 67
Query: 182 GSECSTRKTRIIDVVYNASNNELV 253
GSEC TRKTRIIDVVYNASNNELV
Sbjct: 68 GSECCTRKTRIIDVVYNASNNELV 91
Score = 127 bits (307), Expect = 3e-29
Identities = 57/84 (67%), Positives = 69/84 (82%)
Frame = +1
Query: 256 TKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLAR 435
TKTLVKN IV++D+TP+RQWYESHY LPLGRKKGAKLT EE I+NKKRS+K +KY R
Sbjct: 93 TKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDER 152
Query: 436 QRLAKVEGALEEQFHTGRLLACVA 507
++ AK+ LEEQF G+LLAC+A
Sbjct: 153 KKNAKISSLLEEQFQQGKLLACIA 176
Score = 64.1 bits (149), Expect = 4e-10
Identities = 26/31 (83%), Positives = 30/31 (96%)
Frame = +3
Query: 510 RPGQCGRADGYILEGKELEFYLRKIKSKRAK 602
RPGQCGRADGY+LEGKELEFYLRKIK+++ K
Sbjct: 178 RPGQCGRADGYVLEGKELEFYLRKIKARKGK 208
>AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 161 bits (392), Expect = 1e-39
Identities = 72/84 (85%), Positives = 76/84 (90%)
Frame = +2
Query: 2 WHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSW 181
WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRLD GNFSW
Sbjct: 8 WHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSW 67
Query: 182 GSECSTRKTRIIDVVYNASNNELV 253
GSEC TRKTRIIDVVYNASNNELV
Sbjct: 68 GSECCTRKTRIIDVVYNASNNELV 91
Score = 127 bits (307), Expect = 3e-29
Identities = 57/84 (67%), Positives = 69/84 (82%)
Frame = +1
Query: 256 TKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLAR 435
TKTLVKN IV++D+TP+RQWYESHY LPLGRKKGAKLT EE I+NKKRS+K +KY R
Sbjct: 93 TKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDER 152
Query: 436 QRLAKVEGALEEQFHTGRLLACVA 507
++ AK+ LEEQF G+LLAC+A
Sbjct: 153 KKNAKISSLLEEQFQQGKLLACIA 176
Score = 64.1 bits (149), Expect = 4e-10
Identities = 26/31 (83%), Positives = 30/31 (96%)
Frame = +3
Query: 510 RPGQCGRADGYILEGKELEFYLRKIKSKRAK 602
RPGQCGRADGY+LEGKELEFYLRKIK+++ K
Sbjct: 178 RPGQCGRADGYVLEGKELEFYLRKIKARKGK 208
>AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8
protein.
Length = 188
Score = 127 bits (307), Expect = 3e-29
Identities = 57/84 (67%), Positives = 69/84 (82%)
Frame = +1
Query: 256 TKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLAR 435
TKTLVKN IV++D+TP+RQWYESHY LPLGRKKGAKLT EE I+NKKRS+K +KY R
Sbjct: 73 TKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDER 132
Query: 436 QRLAKVEGALEEQFHTGRLLACVA 507
++ AK+ LEEQF G+LLAC+A
Sbjct: 133 KKNAKISSLLEEQFQQGKLLACIA 156
Score = 101 bits (242), Expect = 2e-21
Identities = 55/84 (65%), Positives = 59/84 (70%)
Frame = +2
Query: 2 WHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSW 181
WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGG
Sbjct: 8 WHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGG---------------- 51
Query: 182 GSECSTRKTRIIDVVYNASNNELV 253
C TRKTRIIDVVYNASNNELV
Sbjct: 52 ---C-TRKTRIIDVVYNASNNELV 71
Score = 64.1 bits (149), Expect = 4e-10
Identities = 26/31 (83%), Positives = 30/31 (96%)
Frame = +3
Query: 510 RPGQCGRADGYILEGKELEFYLRKIKSKRAK 602
RPGQCGRADGY+LEGKELEFYLRKIK+++ K
Sbjct: 158 RPGQCGRADGYVLEGKELEFYLRKIKARKGK 188
>BC005678-1|AAH05678.1| 80|Homo sapiens Similar to ribosomal
protein S8 protein.
Length = 80
Score = 64.1 bits (149), Expect = 4e-10
Identities = 26/31 (83%), Positives = 30/31 (96%)
Frame = +3
Query: 510 RPGQCGRADGYILEGKELEFYLRKIKSKRAK 602
RPGQCGRADGY+LEGKELEFYLRKIK+++ K
Sbjct: 50 RPGQCGRADGYVLEGKELEFYLRKIKARKGK 80
Score = 58.8 bits (136), Expect = 2e-08
Identities = 27/48 (56%), Positives = 35/48 (72%)
Frame = +1
Query: 364 LTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVA 507
LT EE I+NKKRS+K +KY R++ AK+ LEEQF G+LLAC+A
Sbjct: 1 LTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIA 48
>CR457284-1|CAG33565.1| 201|Homo sapiens FLJ11749 protein.
Length = 201
Score = 30.7 bits (66), Expect = 4.6
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +1
Query: 343 GRKKGAKLTEAEEAIINKKRSQKTARKYLAR--QRLAKVEGALEEQFHTGR 489
GRKK +++TE ++AI+ K+ + R+Y R Q+L + + GR
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERALARQLLRDGR 56
>BC010108-1|AAH10108.1| 201|Homo sapiens chromatin modifying
protein 6 protein.
Length = 201
Score = 30.7 bits (66), Expect = 4.6
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +1
Query: 343 GRKKGAKLTEAEEAIINKKRSQKTARKYLAR--QRLAKVEGALEEQFHTGR 489
GRKK +++TE ++AI+ K+ + R+Y R Q+L + + GR
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERALARQLLRDGR 56
>AY329087-1|AAQ91196.1| 201|Homo sapiens VPS20 protein.
Length = 201
Score = 30.7 bits (66), Expect = 4.6
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +1
Query: 343 GRKKGAKLTEAEEAIINKKRSQKTARKYLAR--QRLAKVEGALEEQFHTGR 489
GRKK +++TE ++AI+ K+ + R+Y R Q+L + + GR
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERALARQLLRDGR 56
>AK021811-1|BAB13901.1| 201|Homo sapiens protein ( Homo sapiens
cDNA FLJ11749 fis, clone HEMBA1005558, weakly similar to
NUCLEAR PROTEIN SNF7. ).
Length = 201
Score = 30.7 bits (66), Expect = 4.6
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +1
Query: 343 GRKKGAKLTEAEEAIINKKRSQKTARKYLAR--QRLAKVEGALEEQFHTGR 489
GRKK +++TE ++AI+ K+ + R+Y R Q+L + + GR
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERALARQLLRDGR 56
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,159,354
Number of Sequences: 237096
Number of extensions: 1801831
Number of successful extensions: 4369
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4369
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7028963750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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