Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV41019
(639 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal prote... 128 3e-30
U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis... 31 0.53
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis... 31 0.53
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis... 31 0.53
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis... 31 0.53
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis... 31 0.53
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res... 31 0.53
L14745-8|AAA27923.1| 244|Caenorhabditis elegans Tetraspanin fam... 28 4.9
U88315-4|AAB42369.3| 778|Caenorhabditis elegans Hypothetical pr... 28 6.5
>U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 8 protein.
Length = 208
Score = 128 bits (310), Expect = 3e-30
Identities = 57/84 (67%), Positives = 68/84 (80%)
Frame = +2
Query: 2 WHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSW 181
WHKR TG + KKRK+ELGRPAANT++G R+ VR+RGGN KYRALRLD+GNFSW
Sbjct: 8 WHKRYKTGATQPVPHKKRKFELGRPAANTKIGAHRVRLVRTRGGNEKYRALRLDSGNFSW 67
Query: 182 GSECSTRKTRIIDVVYNASNNELV 253
SE +TRKTRI+D +YNA+NNELV
Sbjct: 68 ASEQTTRKTRIVDTMYNATNNELV 91
Score = 116 bits (279), Expect = 1e-26
Identities = 54/84 (64%), Positives = 65/84 (77%)
Frame = +1
Query: 256 TKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLAR 435
TKTLVK AI+ VDA PFRQWYE+HY LPL RKK AKL+E + AI+NKKRS T +KY R
Sbjct: 93 TKTLVKGAIISVDAAPFRQWYEAHYALPLARKKNAKLSEEDNAILNKKRSHHTMKKYTER 152
Query: 436 QRLAKVEGALEEQFHTGRLLACVA 507
Q+ A V+ L EQF+TGRLLA ++
Sbjct: 153 QKTAAVDALLIEQFNTGRLLARIS 176
Score = 55.2 bits (127), Expect = 4e-08
Identities = 23/30 (76%), Positives = 29/30 (96%)
Frame = +3
Query: 513 PGQCGRADGYILEGKELEFYLRKIKSKRAK 602
PGQ G+A+GYILEGKEL+FYLRKI++K+AK
Sbjct: 179 PGQVGQANGYILEGKELDFYLRKIRAKKAK 208
>U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug
resistance related protein1 protein.
Length = 1540
Score = 31.5 bits (68), Expect = 0.53
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +2
Query: 149 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 253
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform e protein.
Length = 1534
Score = 31.5 bits (68), Expect = 0.53
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +2
Query: 149 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 253
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform c protein.
Length = 1534
Score = 31.5 bits (68), Expect = 0.53
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +2
Query: 149 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 253
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform b protein.
Length = 1534
Score = 31.5 bits (68), Expect = 0.53
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +2
Query: 149 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 253
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform a protein.
Length = 1528
Score = 31.5 bits (68), Expect = 0.53
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +2
Query: 149 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 253
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
resistance-associatedprotein protein.
Length = 1534
Score = 31.5 bits (68), Expect = 0.53
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +2
Query: 149 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 253
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>L14745-8|AAA27923.1| 244|Caenorhabditis elegans Tetraspanin family
protein 1 protein.
Length = 244
Score = 28.3 bits (60), Expect = 4.9
Identities = 10/20 (50%), Positives = 17/20 (85%)
Frame = -1
Query: 255 STNSLLDALYTTSMIRVLRV 196
+TNSL+DA+YTT+ + L++
Sbjct: 132 NTNSLIDAMYTTNSVNDLKI 151
>U88315-4|AAB42369.3| 778|Caenorhabditis elegans Hypothetical
protein C37H5.5 protein.
Length = 778
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/42 (35%), Positives = 27/42 (64%)
Frame = +1
Query: 346 RKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEE 471
+K G A++ I K+++ KTA+KY +++LA++E L E
Sbjct: 424 KKSGKDALIAKKYQIKKEKASKTAKKY--KKQLARLEADLLE 463
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,729,403
Number of Sequences: 27780
Number of extensions: 276713
Number of successful extensions: 843
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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