Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV41017
         (834 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              25   0.86 
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    23   2.6  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    23   2.6  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    23   3.5  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    23   3.5  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   6.1  

>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 25.0 bits (52), Expect = 0.86
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 692 ISLSFIIIFHCIARYELINDLL 757
           + L    IF CI +++ IND+L
Sbjct: 112 VHLKITKIFQCITKFKTINDIL 133


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 613 NRDHKIKTL*TNNFNKQEKHYH*HYA*NEVKL 518
           +++HKI +  +NN+N    +Y   Y  N  KL
Sbjct: 76  SKEHKIISSLSNNYNYNNNNYKKLYCNNYKKL 107


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 613 NRDHKIKTL*TNNFNKQEKHYH*HYA*NEVKL 518
           +++HKI +  +NN+N    +Y   Y  N  KL
Sbjct: 76  SKEHKIISSLSNNYNYNNNNYKKLYCNNYKKL 107


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 613 NRDHKIKTL*TNNFNKQEKHYH*HYA*NEVKL 518
           +++HKI +  +NN+N    +Y   Y  N  KL
Sbjct: 76  SKEHKIISSLSNNYNYNNNNYKKLYCNNYRKL 107


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +3

Query: 336 VALYPKSVSIVTLTPSVKESKVSAR 410
           VALYP SV ++ L   V     S R
Sbjct: 220 VALYPSSVQVIALGVGVSNFLSSTR 244


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +3

Query: 324 YKATVALYPKSVSIVTLTPSVKESKVSAR 410
           Y A   LY  SVS+V+L  S++ + +SAR
Sbjct: 297 YMAFSKLY--SVSVVSLDKSLEVNHISAR 323


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,260
Number of Sequences: 438
Number of extensions: 4143
Number of successful extensions: 17
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26702940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)