Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV41015
         (818 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.12 |||conserved eukaryotic protein|Schizosaccharomyces ...    44   2e-05
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch...    28   1.4  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    27   4.2  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    27   4.2  
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    26   5.6  
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd...    26   7.4  

>SPAC11E3.12 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 162

 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
 Frame = +2

Query: 197 SRGFVGHLP*RSQARCHDSLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFY-T 373
           ++  +   P R Q+     LLDLAQRQ G W+P +AM+++A +  +    V+ +   Y  
Sbjct: 15  AKAILARYPLRFQSAALVPLLDLAQRQHGTWIPPTAMYEIASLAGVSIDYVHSLILAYPN 74

Query: 374 MFIRRPIGKYHVQVCTTTPC 433
            F  RP  K  V++C +  C
Sbjct: 75  DFFWRP-KKPRVRICNSWMC 93



 Score = 28.3 bits (60), Expect = 1.4
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +1

Query: 517 FSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKL 636
           F V    CLG C   P + +ND  Y   + E   +I+  L
Sbjct: 118 FDVENTGCLGNCFQGPAMWINDKIYGVNTKEKLVDIMEAL 157


>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 872

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = -3

Query: 342 IFGRFKISATLCIAEIGSQPPLCRCARSSKESWHLACDLQGKWPTKPLLSFDWPARISK 166
           +FG   I+  L I  + S P LC C    ++   L CD    +  K LL   W   +S+
Sbjct: 29  LFGCLTINIYLKIFTLISTPDLCNCRLVCRKFQQL-CDYNSIYVKKLLLMNAWDVTLSR 86


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +2

Query: 416 CTTTPCWLRGSDAILNAIKQETNCEVGGN 502
           C T   W+ G  A+  A   + NCE G N
Sbjct: 508 CETGKSWMYGGMALRMAAALQLNCEQGSN 536


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
 Frame = +2

Query: 428 PCWLRGSDAILNAIKQETNC--EVGGNSPVE-SFPFQRLNVWELV*TPQ*YKSMMITMRT 598
           PCWL+      +A+K  + C  E+G +SP   S  F++  +     TP     M +  RT
Sbjct: 477 PCWLKIQQPNFDAVKNASWCRVEIGCSSPQNISVSFEKNEITSK--TPP-MTVMSLAFRT 533

Query: 599 CL*KIQKK 622
            + K Q K
Sbjct: 534 LINKEQNK 541


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1183

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 14/52 (26%), Positives = 22/52 (42%)
 Frame = +2

Query: 47  RTGVQGLWRMSSKSIQTTASRQHDSLFVHRDTPEDNPSIPFEILAGQSKESR 202
           ++G+Q +  +    +  +   Q  S  VH +   DN     EIL    KE R
Sbjct: 14  QSGIQKMLNLKRARLHRSVREQESSSEVHANPEPDNQDSNAEILIDVPKEER 65


>SPBC2G2.08 |ade9||C-1-
           tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
           ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
           trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 969

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = +3

Query: 24  SKKCYPASGLEYRACGVCPLSQFRPQHQGNMTVCLS 131
           +K+ Y A+G+E+ +     ++ F  Q  GN+ +C++
Sbjct: 865 AKEMYGANGVEFSSLAKERINTFIKQGFGNLPICMA 900


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,615,430
Number of Sequences: 5004
Number of extensions: 77481
Number of successful extensions: 244
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)