Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV41015
         (818 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   4.5  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   5.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.9  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +3

Query: 615 KRNYQQIKEGRETQTWAQEWK 677
           K+   +I EG+E++T   +W+
Sbjct: 213 KKKEDEIDEGKESKTKLSQWR 233


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +2

Query: 422 TTPCWLRGSDAILNAIKQETNCEVGGNSPVESFP 523
           T P W  G  A L  I  +TN   GG+  +  +P
Sbjct: 82  TVPRWRNGIPATLTYISLDTN--RGGSPKLTPYP 113


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 131  HRDTPEDNPSIPFEILAGQSKE 196
            +R+T   NPS  F  ++G  +E
Sbjct: 1046 YRETSSSNPSYNFSSVSGDGEE 1067


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 131  HRDTPEDNPSIPFEILAGQSKE 196
            +R+T   NPS  F  ++G  +E
Sbjct: 1042 YRETSSSNPSYNFSSVSGDGEE 1063


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 242,281
Number of Sequences: 438
Number of extensions: 5598
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26096055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)