Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV41014
         (775 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    30   0.32 
SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown 7|Schizos...    27   2.3  
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm...    26   6.9  
SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces...    25   9.1  

>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 30.3 bits (65), Expect = 0.32
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = -2

Query: 372 RLWITYYQNFEKY*WLYKLYIFWHDSLCDSKTIF 271
           R W+ +  NF +  W+  + +FW+ ++ +S TI+
Sbjct: 415 RTWLHFLHNFSRI-WILHISVFWYFTVYNSPTIY 447


>SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown
           7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 581

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -3

Query: 374 FVYGLHIIRISKNINGFTNCTFSGMIAFVTVKPFFIGSRSFKATNVPSI 228
           F   L +I  S N N F    F G +A      FFIG + +  +++PS+
Sbjct: 498 FYVSLFLIGGSPNANDF----FQGYLAACIALAFFIGYKIYDRSHIPSL 542


>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
           intermediate chain Dic1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 544

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +1

Query: 187 SFCKKNKITLVVGCIDGTLVALKDLLPIKNGFTVTKAIMPENVQF 321
           SF  +N +  +VG  DG L         ++ ++ TKA+ P NV +
Sbjct: 351 SFIPENNMEFLVGAEDGKLQR-----GYRSDYSETKAVQPSNVSY 390


>SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 583

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -3

Query: 374 FVYGLHIIRISKNINGFTNCTFSGMIAFVTVKPFFIGSRSFKATNVPSI 228
           F   L  I    N N F    F G +A   V  FFIG + +  +++PS+
Sbjct: 502 FYVSLFPIGSKPNANDF----FQGYLAAPIVIAFFIGYKIYDRSHIPSL 546


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,964,371
Number of Sequences: 5004
Number of extensions: 56974
Number of successful extensions: 118
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)