Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV41013
(808 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1834.01 |sup45||translation release factor eRF1|Schizosaccha... 139 5e-34
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 29 1.0
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 27 3.1
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr... 27 3.1
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb... 27 4.1
SPBC13E7.11 ||SPBC30D10.19c|mitochondrial rhomboid protease|Schi... 27 4.1
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 26 7.2
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 25 9.6
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 25 9.6
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 25 9.6
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S... 25 9.6
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 25 9.6
>SPAC1834.01 |sup45||translation release factor
eRF1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 433
Score = 139 bits (336), Expect = 5e-34
Identities = 64/85 (75%), Positives = 71/85 (83%)
Frame = +3
Query: 510 CDNKFHTEALTALLADDNKFGFIVMDGNGALFGTLQGNTREVLHKFTVDLPKKHGRGGQS 689
CDNKFHTEAL LL D +FGFIVMDG+ L+G + G+ REVL +FTVDLPKKHGRGGQS
Sbjct: 124 CDNKFHTEALAELLESDQRFGFIVMDGHQTLYGVVSGSAREVLQRFTVDLPKKHGRGGQS 183
Query: 690 ALRFARLRMEKRHNYVRKVAEVATR 764
ALRFARLR EKRHNYVRKVAE A +
Sbjct: 184 ALRFARLRDEKRHNYVRKVAEGAVQ 208
Score = 132 bits (319), Expect = 6e-32
Identities = 62/83 (74%), Positives = 70/83 (84%)
Frame = +1
Query: 259 DQISRVSKMLADEFGTASNIKSRVNRLSVLGAITSVQHRLKLYTKVPPNGLVIYCGTIVT 438
+QISR S MLA+E+GTASNIKSRVNRLSVL AITS + RLKLY KVP NGLVIYCG ++
Sbjct: 40 EQISRYSNMLAEEYGTASNIKSRVNRLSVLSAITSTRERLKLYNKVPDNGLVIYCGEVIM 99
Query: 439 EEGKEKKVNIDFEPFKPINTSLY 507
E K +K+NIDFEPFKPINTS Y
Sbjct: 100 EGNKTRKLNIDFEPFKPINTSQY 122
Score = 48.8 bits (111), Expect = 9e-07
Identities = 23/39 (58%), Positives = 31/39 (79%)
Frame = +2
Query: 137 MSEESSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIP 253
MSE +A++ +EIWKI++L+K L GNGTSMI+LIIP
Sbjct: 1 MSE--TAEKAIEIWKIRRLVKQLINCHGNGTSMITLIIP 37
Score = 25.4 bits (53), Expect = 9.6
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = +2
Query: 767 FISADRPNVAGLIL 808
FI+ D+PNVAG++L
Sbjct: 210 FITDDKPNVAGIVL 223
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 28.7 bits (61), Expect = 1.0
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 409 LVIYCGTIVTEEGKEKKVNIDFEPFKPINTSLYP 510
L ++ VT+EGKEK + I E F+ I+ +YP
Sbjct: 619 LSLWTACCVTDEGKEKNIKIAVEIFREISI-VYP 651
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 27.1 bits (57), Expect = 3.1
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +1
Query: 481 FKPINTSLYPATTSSTPRL 537
FKPIN + +P+ TSST ++
Sbjct: 397 FKPINPTSFPSLTSSTKKI 415
>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 749
Score = 27.1 bits (57), Expect = 3.1
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +2
Query: 116 LNKKRNKMSEE--SSADRNVEIWKIKKLIKSLEMARGNGTS 232
LN+ N +S SSAD +E W K I S + +R TS
Sbjct: 10 LNRLNNGLSSNNGSSADEGLEHWNPLKKIHSADSSRRRSTS 50
>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 440
Score = 26.6 bits (56), Expect = 4.1
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Frame = -1
Query: 136 FVSLFI*LINHKHYIC-INN*NNVF-AQHQN 50
F + F+ L +HK+YIC + N NN++ QH +
Sbjct: 197 FSTKFVALSSHKNYICGLTNDNNLYILQHSH 227
>SPBC13E7.11 ||SPBC30D10.19c|mitochondrial rhomboid
protease|Schizosaccharomyces pombe|chr 2|||Manual
Length = 298
Score = 26.6 bits (56), Expect = 4.1
Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 5/74 (6%)
Frame = +1
Query: 286 LADEFGTASNIKSRVNRLSVLGAITSVQHRLKLYTKVPPNGL----VIYCGTIVTEE-GK 450
+ D FG + ++ + + + HRL+ TKV P L IY T
Sbjct: 149 IVDVFGNNQFVAFYISSILFSNVASLLHHRLRFGTKVTPGSLGASGAIYAIAAATSYFFP 208
Query: 451 EKKVNIDFEPFKPI 492
V+I F PF PI
Sbjct: 209 NASVSIIFLPFIPI 222
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.8 bits (54), Expect = 7.2
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +3
Query: 630 EVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAEVATRCSSVLTG 785
+++ F D+P + G GGQ A R A R+ + + E+ SVL G
Sbjct: 1597 DLMDLFGSDVPVEGGEGGQFAWRDAPFLAAMRNGHWVLLDELNLASQSVLEG 1648
>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 9.6
Identities = 7/20 (35%), Positives = 16/20 (80%)
Frame = +2
Query: 269 REYQRCWLMNLVQLPISSHV 328
R+YQ CW+++++ +S++V
Sbjct: 10 RDYQNCWMVSIMGTGLSANV 29
>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 9.6
Identities = 7/20 (35%), Positives = 16/20 (80%)
Frame = +2
Query: 269 REYQRCWLMNLVQLPISSHV 328
R+YQ CW+++++ +S++V
Sbjct: 10 RDYQNCWMVSIMGTGLSANV 29
>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 9.6
Identities = 7/20 (35%), Positives = 16/20 (80%)
Frame = +2
Query: 269 REYQRCWLMNLVQLPISSHV 328
R+YQ CW+++++ +S++V
Sbjct: 10 RDYQNCWMVSIMGTGLSANV 29
>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
Mde5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 25.4 bits (53), Expect = 9.6
Identities = 12/45 (26%), Positives = 20/45 (44%)
Frame = +1
Query: 367 QHRLKLYTKVPPNGLVIYCGTIVTEEGKEKKVNIDFEPFKPINTS 501
Q + L + G+ + T+V G NID+ ++P N S
Sbjct: 120 QDLIDLADALHDRGMYLMVDTVVNHMGSSDPRNIDYGIYRPFNQS 164
>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 9.6
Identities = 7/20 (35%), Positives = 16/20 (80%)
Frame = +2
Query: 269 REYQRCWLMNLVQLPISSHV 328
R+YQ CW+++++ +S++V
Sbjct: 10 RDYQNCWMVSIMGTGLSANV 29
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,355,588
Number of Sequences: 5004
Number of extensions: 69851
Number of successful extensions: 189
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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