Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV41012
         (824 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    22   6.0  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    22   6.0  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   6.0  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    22   6.0  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    22   7.9  

>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +3

Query: 378 DKSDTHNKTSLVVVSDRKE 434
           D+S+T N +  V++SD+ E
Sbjct: 89  DRSNTSNTSKTVILSDKLE 107


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +3

Query: 378 DKSDTHNKTSLVVVSDRKE 434
           D+S+T N +  V++SD+ E
Sbjct: 89  DRSNTSNTSKTVILSDKLE 107


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +3

Query: 378 DKSDTHNKTSLVVVSDRKE 434
           D+S+T N +  V++SD+ E
Sbjct: 89  DRSNTSNTSKTVILSDKLE 107


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +3

Query: 378 DKSDTHNKTSLVVVSDRKE 434
           D+S+T N +  V++SD+ E
Sbjct: 89  DRSNTSNTSKTVILSDKLE 107


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +3

Query: 378 DKSDTHNKTSLVVVSDR 428
           DKS+T N +  +++SD+
Sbjct: 89  DKSNTSNTSKTIILSDK 105


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,756
Number of Sequences: 438
Number of extensions: 3961
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26338809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)