Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV41010
(712 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16C9.02c |||S-methyl-5-thioadenosine phosphorylase|Schizosac... 88 1e-18
SPAC1805.16c |||purine nucleoside phosphorylase |Schizosaccharom... 54 2e-08
SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr 3... 27 2.0
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 27 2.6
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc... 27 2.6
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch... 26 6.1
SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr 2|||Ma... 26 6.1
SPAC23H4.06 |gln1||glutamate-ammonia ligase Gln1|Schizosaccharom... 26 6.1
SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 8.1
SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|ch... 25 8.1
>SPAC16C9.02c |||S-methyl-5-thioadenosine
phosphorylase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 307
Score = 87.8 bits (208), Expect = 1e-18
Identities = 35/72 (48%), Positives = 51/72 (70%)
Frame = +2
Query: 305 TAVVIQGPRFSSRAESLVHRQWGGHLVNMTTVPEVVLAKEAGLSYAAVALVTDYDCWREN 484
T V ++GP FS+RAES ++R WG ++NM+ +PE LA+EA ++Y V + TDYDCWR N
Sbjct: 170 TVVCMEGPAFSTRAESNLYRSWGASIINMSVIPEAKLAREAEIAYQMVCMATDYDCWRMN 229
Query: 485 EKSVSVSEFWQH 520
E+ V+V +H
Sbjct: 230 EEPVTVETVMEH 241
Score = 45.6 bits (103), Expect = 7e-06
Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Frame = +3
Query: 9 PSDVNYRANIWALKQVGCTHVLATTATGSLVEEYRPGDLVILDDFIDRT-WGRKCTFYDN 185
P++V RANI ALK +G +++ +A GSL E+ P D V+ IDRT R TF+++
Sbjct: 68 PTEVPSRANIAALKSLGVLAIVSFSAVGSLREDIPPEDFVLPTQIIDRTLCARPNTFFES 127
>SPAC1805.16c |||purine nucleoside phosphorylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 315
Score = 54.4 bits (125), Expect = 2e-08
Identities = 36/88 (40%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Frame = +2
Query: 206 RVPPAHAAGVLLEGARPLYSAAKSRGYS--CHETGTAVVIQGPRFSSRAESLVHRQWGGH 379
R PP A LE + +Y AAK+ S HE G + GP F +RAES + G
Sbjct: 177 RFPPLSDA-YDLELRKLVYDAAKAHKVSRTIHE-GCYAFVSGPCFETRAESRMLALMGAD 234
Query: 380 LVNMTTVPEVVLAKEAGLSYAAVALVTD 463
V M+TVPEVV+A+ G+ A++LVT+
Sbjct: 235 CVGMSTVPEVVVARHCGIRVLAISLVTN 262
>SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 455
Score = 27.5 bits (58), Expect = 2.0
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -3
Query: 389 CLQDGHPIVYGPSFRRDLRIW 327
C+Q G I Y PSFR +W
Sbjct: 155 CIQYGSQIFYDPSFRNAYELW 175
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Frame = -2
Query: 369 HCLWTKLSARLENLGPCMTTAVPVS---WHEYPL 277
HC T+ +L +LG TT VPV+ H +PL
Sbjct: 784 HCNKTEEEIKLPSLGSAFTTPVPVNETYTHNWPL 817
>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 849
Score = 27.1 bits (57), Expect = 2.6
Identities = 8/17 (47%), Positives = 14/17 (82%)
Frame = +3
Query: 93 SLVEEYRPGDLVILDDF 143
++V YRPGDL+++ D+
Sbjct: 210 NIVSNYRPGDLILIHDY 226
>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 25.8 bits (54), Expect = 6.1
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +1
Query: 103 KNTGLEIWSYWTISLI 150
KN + IW+YW ++LI
Sbjct: 586 KNFDVRIWNYWLVALI 601
>SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 413
Score = 25.8 bits (54), Expect = 6.1
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +3
Query: 96 LVEEYRPGD-LVILDDFIDR-TWGRKCTFYDNTYGGPRGVCHLP 221
++E+ RP + L DD +D TW K +D Y G HLP
Sbjct: 34 VLEKLRPTENLAYEDDSLDDDTWRSKRWEFDYQYSGISTFAHLP 77
>SPAC23H4.06 |gln1||glutamate-ammonia ligase
Gln1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 359
Score = 25.8 bits (54), Expect = 6.1
Identities = 15/66 (22%), Positives = 24/66 (36%)
Frame = +3
Query: 174 FYDNTYGGPRGVCHLPMQPAYCWRARAHCTARPSLGGTRAMKPALRLSYRDPDSQVAPKA 353
+YD +G P+G P P YC AR + ++ +++V P
Sbjct: 143 YYDRPFGWPKGGFPGPQGPFYCGVGTGRVFARDIVEAHYKACLYAGINISGINAEVMPSQ 202
Query: 354 WSIDNG 371
W G
Sbjct: 203 WEYQVG 208
>SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 569
Score = 25.4 bits (53), Expect = 8.1
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -2
Query: 249 APSNNTPAAWAGGTRRADPHTCCRKTCTSDPKSY 148
+PS P A + G R P ++ SDP SY
Sbjct: 179 SPSREIPMACSDGLTRYYPQAVVKQLGLSDPPSY 212
>SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 609
Score = 25.4 bits (53), Expect = 8.1
Identities = 10/33 (30%), Positives = 15/33 (45%)
Frame = +2
Query: 284 YSCHETGTAVVIQGPRFSSRAESLVHRQWGGHL 382
Y CH A + GP F + + H+ W H+
Sbjct: 474 YRCHVGTCAKLFLGPEFVRKHINKKHKDWLDHI 506
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,965,371
Number of Sequences: 5004
Number of extensions: 62295
Number of successful extensions: 148
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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