Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV41009
         (794 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0213 + 15706638-15707915                                         31   1.1  
08_01_0434 + 3809681-3810016,3810039-3811100                           30   1.8  
10_08_0067 + 14620852-14621454                                         28   9.8  
08_02_0565 + 18751383-18751676,18751739-18751825,18752593-18752895     28   9.8  

>09_04_0213 + 15706638-15707915
          Length = 425

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -2

Query: 211 AGGLGGGKPARPRHFGRSFPVHSSNISDFS 122
           AGG GGG+P +   FG +FP  S  ++D S
Sbjct: 219 AGGGGGGQPNKTGGFGFAFPKGSPYVADLS 248


>08_01_0434 + 3809681-3810016,3810039-3811100
          Length = 465

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 159 DRPK*RGRAGFPPPNPPASSR 221
           +R + RGR GF PP PPA  R
Sbjct: 67  ERGRRRGRLGFSPPEPPARER 87


>10_08_0067 + 14620852-14621454
          Length = 200

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 213 RPGGWGAGNRRVPVTSGG 160
           + GGWG G+RRV    GG
Sbjct: 124 KAGGWGGGSRRVKGAQGG 141


>08_02_0565 + 18751383-18751676,18751739-18751825,18752593-18752895
          Length = 227

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 213 RPGGWGAGNRRVPVTSGG 160
           R GGWG+G R+ PV   G
Sbjct: 78  RIGGWGSGERKPPVLGSG 95


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,945,121
Number of Sequences: 37544
Number of extensions: 358206
Number of successful extensions: 1203
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1198
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)