Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV41009
         (794 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58750-14|AAB00655.4|  340|Caenorhabditis elegans Hypothetical p...    30   1.7  
AL034488-1|CAA22455.1|  625|Caenorhabditis elegans Hypothetical ...    29   3.8  
Z83229-3|CAB05740.3|  369|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical pr...    28   6.7  
L07144-6|AAK21443.1|  834|Caenorhabditis elegans Temporarily ass...    28   8.9  
L07144-5|AAU20841.1|  837|Caenorhabditis elegans Temporarily ass...    28   8.9  

>U58750-14|AAB00655.4|  340|Caenorhabditis elegans Hypothetical
           protein F55G1.15 protein.
          Length = 340

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +1

Query: 448 VVQKVYWYFCVVFRIDFNVLVTFFFFKSDFDNLQNNNIRVIFISSV 585
           ++  + W F   + IDF+ LV   +  +D+ NL  N  +V F  ++
Sbjct: 43  IMSTLKWLFYFYYTIDFDELVDDHYMTNDYINLAANICQVFFFGAL 88


>AL034488-1|CAA22455.1|  625|Caenorhabditis elegans Hypothetical
           protein Y54G11A.1 protein.
          Length = 625

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 219 LRRPGGWGAGNRRVPVTSGGLSPFTAQTYPILV 121
           L   GGWGA    +   S   S FTA+  PI++
Sbjct: 152 LEDDGGWGAYRMEIGDASSNRSTFTARAEPIVI 184


>Z83229-3|CAB05740.3|  369|Caenorhabditis elegans Hypothetical
           protein F54F11.3 protein.
          Length = 369

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/53 (20%), Positives = 27/53 (50%)
 Frame = +1

Query: 355 SVHCFLIVFFEKRE*AALFI*FLASQCKNNSVVQKVYWYFCVVFRIDFNVLVT 513
           S  C+ +  +EK+    LF   +  Q   N V+  ++++    F + F+++++
Sbjct: 153 SFACYFLTDYEKKSRNGLFFMLVVGQTSTNLVMGYLFFFNAAHFAVGFSIILS 205


>Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical protein
            ZC116.3 protein.
          Length = 3871

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 18/60 (30%), Positives = 26/60 (43%)
 Frame = -1

Query: 476  QKYQ*TFCTTELFLHCDARNYINKAAYSLFSKNTIKKQWTDDVNLSQNYYYKYALKKFYS 297
            Q  Q   C   + L    +NYI    Y       IK  +   +N    Y+ +YAL+K+YS
Sbjct: 1570 QSSQSDICGQVINLERGKKNYITSPGYPSAYLPGIKCNFL--INAPPGYHIEYALEKYYS 1627


>Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical protein
            ZC116.3 protein.
          Length = 3871

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 18/60 (30%), Positives = 26/60 (43%)
 Frame = -1

Query: 476  QKYQ*TFCTTELFLHCDARNYINKAAYSLFSKNTIKKQWTDDVNLSQNYYYKYALKKFYS 297
            Q  Q   C   + L    +NYI    Y       IK  +   +N    Y+ +YAL+K+YS
Sbjct: 1570 QSSQSDICGQVINLERGKKNYITSPGYPSAYLPGIKCNFL--INAPPGYHIEYALEKYYS 1627


>L07144-6|AAK21443.1|  834|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 84, isoform a protein.
          Length = 834

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
 Frame = -2

Query: 346 ISRKITITNTH*KNFIHNFHDTL*STRKHQKLT---KYYTKTEISLEEAGGLGGGKPA 182
           ++ K+++     +   H   D    T KH +L    +Y   T +S  ++GG GG  P+
Sbjct: 223 LTDKLSVQENRVQELEHQLEDARFETDKHMRLANKFEYKLATLVSEGQSGGNGGATPS 280


>L07144-5|AAU20841.1|  837|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 84, isoform b protein.
          Length = 837

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
 Frame = -2

Query: 346 ISRKITITNTH*KNFIHNFHDTL*STRKHQKLT---KYYTKTEISLEEAGGLGGGKPA 182
           ++ K+++     +   H   D    T KH +L    +Y   T +S  ++GG GG  P+
Sbjct: 223 LTDKLSVQENRVQELEHQLEDARFETDKHMRLANKFEYKLATLVSEGQSGGNGGATPS 280


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,590,891
Number of Sequences: 27780
Number of extensions: 345214
Number of successful extensions: 896
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)