Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV41009
         (794 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    24   1.4  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   4.3  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   4.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   7.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   7.5  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 449 TELFLHCDARNYINKAAYSLFSKNTIKKQWTDDVNLS 339
           ++LF+  D  +YIN+  YS F   T       ++NL+
Sbjct: 117 SDLFVFDDLNDYINRLNYSAFVNLTAYYDGGANLNLN 153


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = -1

Query: 356 DDVNLSQNYYYKYALKKFYS*FSRYAVEYTKAPKTHEILHK 234
           +DV L+  YYY   +  ++   S+Y +      + +  LHK
Sbjct: 226 EDVELNAYYYYMREMLPYWMSSSQYHMPKEIRGQLYYFLHK 266


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = -1

Query: 356 DDVNLSQNYYYKYALKKFYS*FSRYAVEYTKAPKTHEILHK 234
           +DV L+  YYY   +  ++   S+Y +      + +  LHK
Sbjct: 226 EDVELNAYYYYMREMLPYWMSSSQYHMPKEIRGQLYYFLHK 266


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -3

Query: 261  TKNSRNITQKPKSLLRRPGGWGAGNRRVPVTSGGLSPF 148
            T+  R      K  L++    G G  ++P T+  +SP+
Sbjct: 1660 TQRERYYATIHKVALQQAANTGGGPDKIPETAEDISPY 1697


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -3

Query: 261  TKNSRNITQKPKSLLRRPGGWGAGNRRVPVTSGGLSPF 148
            T+  R      K  L++    G G  ++P T+  +SP+
Sbjct: 1656 TQRERYYATIHKVALQQAANTGGGPDKIPETAEDISPY 1693


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,919
Number of Sequences: 438
Number of extensions: 4899
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)