Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV41008
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   148   6e-37
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   148   9e-37
SPCC1919.13c |||conserved eukaryotic protein|Schizosaccharomyces...    27   2.5  
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    27   3.3  
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce...    26   5.8  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    25   7.7  
SPAC31G5.14 |gcv1|n313|glycine decarboxylase T subunit|Schizosac...    25   7.7  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    25   7.7  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  148 bits (359), Expect = 6e-37
 Identities = 66/86 (76%), Positives = 76/86 (88%)
 Frame = +3

Query: 6   MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 185
           MSH KF  PRHGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ 
Sbjct: 1   MSHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDL 60

Query: 186 DRPGSKINKKEIVEAVTIIETPPWFV 263
           DRPGSK++K+EI+EAVTIIETPP  V
Sbjct: 61  DRPGSKMHKREILEAVTIIETPPMVV 86



 Score = 95.5 bits (227), Expect = 6e-21
 Identities = 42/85 (49%), Positives = 60/85 (70%)
 Frame = +2

Query: 254 VVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGR 433
           +V VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYKNW+             + +    
Sbjct: 84  MVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNWFKSKKKAFTKYAKKYAE--ST 141

Query: 434 KSIEKDFKKMIRYCSVVRVIAHTQM 508
           +SI ++ +++ +YCSVVRV+AHTQ+
Sbjct: 142 QSINRELERIKKYCSVVRVLAHTQI 166



 Score = 86.2 bits (204), Expect = 4e-18
 Identities = 36/53 (67%), Positives = 45/53 (84%)
 Frame = +1

Query: 526 QKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIGVTKGKG 684
           QKKAH+MEIQ+NGG++ DKV+WAREH EK + + S F Q+EMID IGVT+GKG
Sbjct: 173 QKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKG 225


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  148 bits (358), Expect = 9e-37
 Identities = 65/86 (75%), Positives = 76/86 (88%)
 Frame = +3

Query: 6   MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 185
           MSH KF  PRHGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ 
Sbjct: 1   MSHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDL 60

Query: 186 DRPGSKINKKEIVEAVTIIETPPWFV 263
           DRPGSK++K+EI+EAVT+IETPP  V
Sbjct: 61  DRPGSKMHKREILEAVTVIETPPMVV 86



 Score = 95.5 bits (227), Expect = 6e-21
 Identities = 42/85 (49%), Positives = 60/85 (70%)
 Frame = +2

Query: 254 VVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGR 433
           +V VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYKNW+             + +    
Sbjct: 84  MVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNWFKSKKKAFTKYAKKYAE--ST 141

Query: 434 KSIEKDFKKMIRYCSVVRVIAHTQM 508
           +SI ++ +++ +YCSVVRV+AHTQ+
Sbjct: 142 QSINRELERIKKYCSVVRVLAHTQI 166



 Score = 86.2 bits (204), Expect = 4e-18
 Identities = 36/53 (67%), Positives = 45/53 (84%)
 Frame = +1

Query: 526 QKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIGVTKGKG 684
           QKKAH+MEIQ+NGG++ DKV+WAREH EK + + S F Q+EMID IGVT+GKG
Sbjct: 173 QKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKG 225


>SPCC1919.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 282

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +1

Query: 502 SNELLKQRQKKA--HIMEIQLNGGTIEDKVKWAREHLEKPI 618
           S E LKQ+   A  +I +I++NGG +  ++   + HL K +
Sbjct: 92  SKEDLKQKYPDAAEYISKIEINGGKVMHEIDATKLHLHKKL 132


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +3

Query: 279 TLRPLMDYALF*LSGRSICLKTVDVASTKTGTNARRRLSLKPVRNGRMSLD 431
           TL    DYA+   S +S+ LK   V+   T T  RRR +    RN  + L+
Sbjct: 219 TLEVDTDYAIIFNSKKSLPLKRNVVSPISTHTKKRRRTANTSQRNDGLDLN 269


>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 554

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = -3

Query: 182 FSNHVGHTGLITDKSSQMNRFARVVFRERLDLTTMTTGPLFGIESHRPMTGC*KF 18
           F N VG  G+I D S  +   +R+VF    D     +G L  ++SH   T    F
Sbjct: 344 FMNVVGILGMIFDTSLSIVASSRLVFAVARDGVLPFSGWLRKVDSHGQPTNAVTF 398


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -1

Query: 436  FASKLILPFLTGFSESLLLAFVPVFVEATST 344
            F SKL L  +  F E + LAF+  F+E TS+
Sbjct: 1032 FFSKLTLQQVQEFYEVVPLAFINCFLEFTSS 1062


>SPAC31G5.14 |gcv1|n313|glycine decarboxylase T
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +1

Query: 544 MEIQLNGGTIEDKVKWAREH 603
           M +Q  G TI    KW REH
Sbjct: 46  MPVQYKGQTISASHKWTREH 65


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = +2

Query: 200 KNQQERDRGGCHHHRDSSVVCVGVVGYIETPHGLRA 307
           K+ Q+   G CH   D S V +   G   TP G  A
Sbjct: 3   KDWQDARLGQCHRLEDYSNVAINYTGPYLTPSGTMA 38


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,993,587
Number of Sequences: 5004
Number of extensions: 61650
Number of successful extensions: 167
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)