Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV41008
(685 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342... 148 5e-36
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327... 146 1e-35
11_01_0710 - 5830475-5830595,5831498-5834124 32 0.49
04_04_1477 + 33873976-33874080,33874433-33874544,33874777-338748... 29 2.6
04_04_1035 + 30283456-30283536,30284823-30285359,30285508-302865... 29 2.6
01_06_0083 + 26283492-26283756,26284255-26284467,26284620-262847... 28 6.0
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753... 28 7.9
>12_01_0435 +
3428552-3428636,3429242-3429352,3429434-3429738,
3429821-3430230,3430323-3430556,3430934-3431378,
3432300-3432390,3433292-3433518,3433786-3433861,
3434009-3434134,3434221-3434384
Length = 757
Score = 148 bits (358), Expect = 5e-36
Identities = 64/83 (77%), Positives = 74/83 (89%)
Frame = +3
Query: 6 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 185
MSHRKF PRHGS+GF P+KRS RHRGKVK+FPKDD SKP HLT+F+GYKAGMTH+VRE
Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVSKPCHLTSFVGYKAGMTHIVREV 60
Query: 186 DRPGSKINKKEIVEAVTIIETPP 254
++PGSK++KKE EAVTIIETPP
Sbjct: 61 EKPGSKLHKKETCEAVTIIETPP 83
Score = 93.1 bits (221), Expect = 2e-19
Identities = 40/85 (47%), Positives = 57/85 (67%)
Frame = +2
Query: 254 VVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGR 433
+V VG+V Y++TP GLR+L +VWA+H+SE+ RRRFYKNW + + G+
Sbjct: 84 LVIVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYKNWCKSKKKAFTKYALKYDSDAGK 143
Query: 434 KSIEKDFKKMIRYCSVVRVIAHTQM 508
K I+ +KM +Y S+VRVIAHTQ+
Sbjct: 144 KEIQMQLEKMKKYASIVRVIAHTQI 168
Score = 84.2 bits (199), Expect = 9e-17
Identities = 38/54 (70%), Positives = 45/54 (83%)
Frame = +1
Query: 523 RQKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIGVTKGKG 684
+QKKAH+MEIQ+NGGTI DKV + + EK IPVD+VF +DEMID IGVTKGKG
Sbjct: 175 KQKKAHLMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKG 228
>11_01_0427 +
3274817-3274901,3275587-3275697,3275979-3276283,
3276406-3276815,3276942-3277200
Length = 389
Score = 146 bits (355), Expect = 1e-35
Identities = 63/83 (75%), Positives = 74/83 (89%)
Frame = +3
Query: 6 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 185
MSHRKF PRHGS+GF P+KRS RHRGKVK+FPKDD +KP HLT+F+GYKAGMTH+VRE
Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVNKPCHLTSFVGYKAGMTHIVREV 60
Query: 186 DRPGSKINKKEIVEAVTIIETPP 254
++PGSK++KKE EAVTIIETPP
Sbjct: 61 EKPGSKLHKKETCEAVTIIETPP 83
Score = 92.7 bits (220), Expect = 2e-19
Identities = 40/85 (47%), Positives = 56/85 (65%)
Frame = +2
Query: 254 VVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGR 433
+V VG+V Y++TP GLR+L +VWA+H+SE+ RRRFYKNW + + G+
Sbjct: 84 IVVVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYKNWCKSKKKAFTKYALKYDSDAGK 143
Query: 434 KSIEKDFKKMIRYCSVVRVIAHTQM 508
K I+ +KM +Y SVVRVI HTQ+
Sbjct: 144 KEIQMQLEKMKKYASVVRVIVHTQI 168
Score = 84.2 bits (199), Expect = 9e-17
Identities = 38/54 (70%), Positives = 45/54 (83%)
Frame = +1
Query: 523 RQKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIGVTKGKG 684
+QKKAH+MEIQ+NGGTI DKV + + EK IPVD+VF +DEMID IGVTKGKG
Sbjct: 175 KQKKAHLMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKG 228
>11_01_0710 - 5830475-5830595,5831498-5834124
Length = 915
Score = 31.9 bits (69), Expect = 0.49
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -3
Query: 659 QSIISSWANTESTGIGFSRCSLAHFTLSSMVPPLSWISIM 540
+S+ISSW + TG S CS+ + + PLS S++
Sbjct: 650 ESVISSWGGSVHTGTSSSSCSVTNLVVKFCTLPLSQWSLL 689
>04_04_1477 +
33873976-33874080,33874433-33874544,33874777-33874874,
33875548-33876261,33876348-33876518,33876955-33877011,
33877096-33878718
Length = 959
Score = 29.5 bits (63), Expect = 2.6
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = +1
Query: 538 HIMEIQLNGGTIEDKVKWAREHLEKPIPVDS 630
H++E + N ++++K+K +H E +P+DS
Sbjct: 460 HLLEDRENNESVDEKIKGDAQHEENTLPLDS 490
>04_04_1035 + 30283456-30283536,30284823-30285359,30285508-30286512,
30286718-30287042,30287563-30287818,30287901-30288117,
30288743-30289095,30289330-30289833,30291267-30292467,
30292614-30292970,30293258-30293495,30294083-30295125,
30295234-30296649,30296731-30296855,30297036-30297314,
30297352-30297382,30298957-30299022,30299447-30299689,
30299848-30299898,30299980-30300071,30300182-30300249,
30300515-30300600,30300720-30300824,30300994-30301127,
30302403-30302436,30302620-30302892,30303019-30303288,
30303384-30303974,30304065-30304214
Length = 3376
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +1
Query: 511 LLKQRQKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMI 654
L Q K+ ++E +++ ++ D+V L KP PV F DE++
Sbjct: 2664 LTSQHGKRIAVIENEVHDFSMPDRVNAINPGLAKPGPVIETFCSDELV 2711
>01_06_0083 +
26283492-26283756,26284255-26284467,26284620-26284771,
26284884-26285157,26285277-26285485
Length = 370
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 439 NRKRFQEDDPLL*CCKSHCPH 501
N +RF +DPLL CC H P+
Sbjct: 297 NPRRFGINDPLLACCGGHGPY 317
>07_03_0481 -
18572206-18574314,18574591-18575185,18575304-18575371,
18577344-18577458,18578179-18578333,18578673-18580621,
18580691-18581372,18581550-18581621,18582558-18583199,
18583301-18583402,18585011-18585100
Length = 2192
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 3 SMSHRKFSAPRHGSM-GFYPKKRSRRHRGKVKAFPKDDPSKPVHLT 137
S+ H + P+ S+ G P +++ + KVK K P VH+T
Sbjct: 239 SLEHSESPPPKRKSLDGRTPASSTKKGKKKVKFVDKKHPENAVHIT 284
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,177,146
Number of Sequences: 37544
Number of extensions: 431995
Number of successful extensions: 1028
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1028
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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