Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV41008
(685 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69337-1|CAA93269.1| 401|Caenorhabditis elegans ribosomal prote... 159 2e-39
Z69336-1|CAA93268.1| 401|Caenorhabditis elegans ribosomal prote... 159 2e-39
Z66495-14|CAH04729.1| 353|Caenorhabditis elegans Hypothetical p... 159 2e-39
Z66495-12|CAA91277.1| 401|Caenorhabditis elegans Hypothetical p... 159 2e-39
Z49936-7|CAH10799.1| 353|Caenorhabditis elegans Hypothetical pr... 159 2e-39
Z49936-6|CAA90183.1| 401|Caenorhabditis elegans Hypothetical pr... 159 2e-39
Z66495-15|CAH04728.1| 303|Caenorhabditis elegans Hypothetical p... 99 3e-21
Z49936-8|CAH10798.1| 303|Caenorhabditis elegans Hypothetical pr... 99 3e-21
AF003146-5|AAB54199.1| 299|Caenorhabditis elegans Hypothetical ... 29 2.3
Z92822-5|CAD45612.3| 743|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z92822-4|CAD18893.2| 791|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z92822-3|CAB07302.3| 774|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z92822-2|CAB70188.2| 850|Caenorhabditis elegans Hypothetical pr... 27 9.4
>Z69337-1|CAA93269.1| 401|Caenorhabditis elegans ribosomal protein
L3 protein.
Length = 401
Score = 159 bits (385), Expect = 2e-39
Identities = 67/87 (77%), Positives = 80/87 (91%)
Frame = +3
Query: 6 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 185
MSHRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60
Query: 186 DRPGSKINKKEIVEAVTIIETPPWFVS 266
D+PGSK+NKKE+VEAVTI+ETPP ++
Sbjct: 61 DKPGSKVNKKEVVEAVTIVETPPMVIA 87
Score = 107 bits (258), Expect = 6e-24
Identities = 47/85 (55%), Positives = 57/85 (67%)
Frame = +2
Query: 254 VVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGR 433
+V GV GY++TP G RAL T+WAEH+SE+ RRRFY NW WQDE G+
Sbjct: 84 MVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNWAKSKKKAFTKYAKKWQDEDGK 143
Query: 434 KSIEKDFKKMIRYCSVVRVIAHTQM 508
K IE DF K+ +YCS +RVIAHTQM
Sbjct: 144 KLIEADFAKLKKYCSSIRVIAHTQM 168
Score = 98.7 bits (235), Expect = 3e-21
Identities = 43/59 (72%), Positives = 53/59 (89%)
Frame = +1
Query: 508 ELLKQRQKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIGVTKGKG 684
++L++RQKKAH++EIQ+NGGTIE KV WAREHLEK + VD+VFAQDEMID IGVT+G G
Sbjct: 169 KILRRRQKKAHLVEIQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIGVTRGHG 227
>Z69336-1|CAA93268.1| 401|Caenorhabditis elegans ribosomal protein
L3 protein.
Length = 401
Score = 159 bits (385), Expect = 2e-39
Identities = 67/87 (77%), Positives = 80/87 (91%)
Frame = +3
Query: 6 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 185
MSHRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60
Query: 186 DRPGSKINKKEIVEAVTIIETPPWFVS 266
D+PGSK+NKKE+VEAVTI+ETPP ++
Sbjct: 61 DKPGSKVNKKEVVEAVTIVETPPMVIA 87
Score = 107 bits (258), Expect = 6e-24
Identities = 47/85 (55%), Positives = 57/85 (67%)
Frame = +2
Query: 254 VVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGR 433
+V GV GY++TP G RAL T+WAEH+SE+ RRRFY NW WQDE G+
Sbjct: 84 MVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNWAKSKKKAFTKYAKKWQDEDGK 143
Query: 434 KSIEKDFKKMIRYCSVVRVIAHTQM 508
K IE DF K+ +YCS +RVIAHTQM
Sbjct: 144 KLIEADFAKLKKYCSSIRVIAHTQM 168
Score = 98.7 bits (235), Expect = 3e-21
Identities = 43/59 (72%), Positives = 53/59 (89%)
Frame = +1
Query: 508 ELLKQRQKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIGVTKGKG 684
++L++RQKKAH++EIQ+NGGTIE KV WAREHLEK + VD+VFAQDEMID IGVT+G G
Sbjct: 169 KILRRRQKKAHLVEIQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIGVTRGHG 227
>Z66495-14|CAH04729.1| 353|Caenorhabditis elegans Hypothetical
protein F13B10.2c protein.
Length = 353
Score = 159 bits (385), Expect = 2e-39
Identities = 67/87 (77%), Positives = 80/87 (91%)
Frame = +3
Query: 6 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 185
MSHRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60
Query: 186 DRPGSKINKKEIVEAVTIIETPPWFVS 266
D+PGSK+NKKE+VEAVTI+ETPP ++
Sbjct: 61 DKPGSKVNKKEVVEAVTIVETPPMVIA 87
Score = 107 bits (258), Expect = 6e-24
Identities = 47/85 (55%), Positives = 57/85 (67%)
Frame = +2
Query: 254 VVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGR 433
+V GV GY++TP G RAL T+WAEH+SE+ RRRFY NW WQDE G+
Sbjct: 84 MVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNWAKSKKKAFTKYAKKWQDEDGK 143
Query: 434 KSIEKDFKKMIRYCSVVRVIAHTQM 508
K IE DF K+ +YCS +RVIAHTQM
Sbjct: 144 KLIEADFAKLKKYCSSIRVIAHTQM 168
>Z66495-12|CAA91277.1| 401|Caenorhabditis elegans Hypothetical
protein F13B10.2a protein.
Length = 401
Score = 159 bits (385), Expect = 2e-39
Identities = 67/87 (77%), Positives = 80/87 (91%)
Frame = +3
Query: 6 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 185
MSHRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60
Query: 186 DRPGSKINKKEIVEAVTIIETPPWFVS 266
D+PGSK+NKKE+VEAVTI+ETPP ++
Sbjct: 61 DKPGSKVNKKEVVEAVTIVETPPMVIA 87
Score = 107 bits (258), Expect = 6e-24
Identities = 47/85 (55%), Positives = 57/85 (67%)
Frame = +2
Query: 254 VVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGR 433
+V GV GY++TP G RAL T+WAEH+SE+ RRRFY NW WQDE G+
Sbjct: 84 MVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNWAKSKKKAFTKYAKKWQDEDGK 143
Query: 434 KSIEKDFKKMIRYCSVVRVIAHTQM 508
K IE DF K+ +YCS +RVIAHTQM
Sbjct: 144 KLIEADFAKLKKYCSSIRVIAHTQM 168
Score = 98.7 bits (235), Expect = 3e-21
Identities = 43/59 (72%), Positives = 53/59 (89%)
Frame = +1
Query: 508 ELLKQRQKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIGVTKGKG 684
++L++RQKKAH++EIQ+NGGTIE KV WAREHLEK + VD+VFAQDEMID IGVT+G G
Sbjct: 169 KILRRRQKKAHLVEIQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIGVTRGHG 227
>Z49936-7|CAH10799.1| 353|Caenorhabditis elegans Hypothetical
protein F13B10.2c protein.
Length = 353
Score = 159 bits (385), Expect = 2e-39
Identities = 67/87 (77%), Positives = 80/87 (91%)
Frame = +3
Query: 6 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 185
MSHRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60
Query: 186 DRPGSKINKKEIVEAVTIIETPPWFVS 266
D+PGSK+NKKE+VEAVTI+ETPP ++
Sbjct: 61 DKPGSKVNKKEVVEAVTIVETPPMVIA 87
Score = 107 bits (258), Expect = 6e-24
Identities = 47/85 (55%), Positives = 57/85 (67%)
Frame = +2
Query: 254 VVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGR 433
+V GV GY++TP G RAL T+WAEH+SE+ RRRFY NW WQDE G+
Sbjct: 84 MVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNWAKSKKKAFTKYAKKWQDEDGK 143
Query: 434 KSIEKDFKKMIRYCSVVRVIAHTQM 508
K IE DF K+ +YCS +RVIAHTQM
Sbjct: 144 KLIEADFAKLKKYCSSIRVIAHTQM 168
>Z49936-6|CAA90183.1| 401|Caenorhabditis elegans Hypothetical
protein F13B10.2a protein.
Length = 401
Score = 159 bits (385), Expect = 2e-39
Identities = 67/87 (77%), Positives = 80/87 (91%)
Frame = +3
Query: 6 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 185
MSHRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60
Query: 186 DRPGSKINKKEIVEAVTIIETPPWFVS 266
D+PGSK+NKKE+VEAVTI+ETPP ++
Sbjct: 61 DKPGSKVNKKEVVEAVTIVETPPMVIA 87
Score = 107 bits (258), Expect = 6e-24
Identities = 47/85 (55%), Positives = 57/85 (67%)
Frame = +2
Query: 254 VVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGR 433
+V GV GY++TP G RAL T+WAEH+SE+ RRRFY NW WQDE G+
Sbjct: 84 MVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNWAKSKKKAFTKYAKKWQDEDGK 143
Query: 434 KSIEKDFKKMIRYCSVVRVIAHTQM 508
K IE DF K+ +YCS +RVIAHTQM
Sbjct: 144 KLIEADFAKLKKYCSSIRVIAHTQM 168
Score = 98.7 bits (235), Expect = 3e-21
Identities = 43/59 (72%), Positives = 53/59 (89%)
Frame = +1
Query: 508 ELLKQRQKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIGVTKGKG 684
++L++RQKKAH++EIQ+NGGTIE KV WAREHLEK + VD+VFAQDEMID IGVT+G G
Sbjct: 169 KILRRRQKKAHLVEIQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIGVTRGHG 227
>Z66495-15|CAH04728.1| 303|Caenorhabditis elegans Hypothetical
protein F13B10.2d protein.
Length = 303
Score = 98.7 bits (235), Expect = 3e-21
Identities = 43/59 (72%), Positives = 53/59 (89%)
Frame = +1
Query: 508 ELLKQRQKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIGVTKGKG 684
++L++RQKKAH++EIQ+NGGTIE KV WAREHLEK + VD+VFAQDEMID IGVT+G G
Sbjct: 71 KILRRRQKKAHLVEIQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIGVTRGHG 129
Score = 63.7 bits (148), Expect = 1e-10
Identities = 27/34 (79%), Positives = 30/34 (88%)
Frame = +3
Query: 6 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPK 107
MSHRKFSAPRHG MGF PKKRSR +RG++KAF K
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFTK 34
Score = 52.4 bits (120), Expect = 3e-07
Identities = 22/32 (68%), Positives = 26/32 (81%)
Frame = +2
Query: 413 WQDELGRKSIEKDFKKMIRYCSVVRVIAHTQM 508
WQDE G+K IE DF K+ +YCS +RVIAHTQM
Sbjct: 39 WQDEDGKKLIEADFAKLKKYCSSIRVIAHTQM 70
>Z49936-8|CAH10798.1| 303|Caenorhabditis elegans Hypothetical
protein F13B10.2d protein.
Length = 303
Score = 98.7 bits (235), Expect = 3e-21
Identities = 43/59 (72%), Positives = 53/59 (89%)
Frame = +1
Query: 508 ELLKQRQKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIGVTKGKG 684
++L++RQKKAH++EIQ+NGGTIE KV WAREHLEK + VD+VFAQDEMID IGVT+G G
Sbjct: 71 KILRRRQKKAHLVEIQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIGVTRGHG 129
Score = 63.7 bits (148), Expect = 1e-10
Identities = 27/34 (79%), Positives = 30/34 (88%)
Frame = +3
Query: 6 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPK 107
MSHRKFSAPRHG MGF PKKRSR +RG++KAF K
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFTK 34
Score = 52.4 bits (120), Expect = 3e-07
Identities = 22/32 (68%), Positives = 26/32 (81%)
Frame = +2
Query: 413 WQDELGRKSIEKDFKKMIRYCSVVRVIAHTQM 508
WQDE G+K IE DF K+ +YCS +RVIAHTQM
Sbjct: 39 WQDEDGKKLIEADFAKLKKYCSSIRVIAHTQM 70
>AF003146-5|AAB54199.1| 299|Caenorhabditis elegans Hypothetical
protein F56F4.2 protein.
Length = 299
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +2
Query: 269 VVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWY 373
+ GY++ G+R VW E S+ + KNW+
Sbjct: 209 IAGYVDQSSGVRGRFWVWHECFSQKYHKDPCKNWF 243
>Z92822-5|CAD45612.3| 743|Caenorhabditis elegans Hypothetical
protein ZK520.4d protein.
Length = 743
Score = 27.5 bits (58), Expect = 9.4
Identities = 23/79 (29%), Positives = 38/79 (48%)
Frame = -3
Query: 437 ICVQAHPAISYWL**KPSSCICTSFCRSDVDSLQTYAPPRQSKERVVHEGSQCIQQHRHK 258
+ VQ P+I + +P + + SDV + P S ER+ +E CIQ+H +
Sbjct: 14 VWVQLRPSIIDIINLRPITNVQWHHKFSDVYDICVSIPTPLS-ERLYNEVKACIQEHVRQ 72
Query: 257 PRRSLDDGDSLHDLFLVDF 201
R+ + D D DL L ++
Sbjct: 73 KRQDIVDVDP--DLLLQEY 89
>Z92822-4|CAD18893.2| 791|Caenorhabditis elegans Hypothetical
protein ZK520.4c protein.
Length = 791
Score = 27.5 bits (58), Expect = 9.4
Identities = 23/79 (29%), Positives = 38/79 (48%)
Frame = -3
Query: 437 ICVQAHPAISYWL**KPSSCICTSFCRSDVDSLQTYAPPRQSKERVVHEGSQCIQQHRHK 258
+ VQ P+I + +P + + SDV + P S ER+ +E CIQ+H +
Sbjct: 31 VWVQLRPSIIDIINLRPITNVQWHHKFSDVYDICVSIPTPLS-ERLYNEVKACIQEHVRQ 89
Query: 257 PRRSLDDGDSLHDLFLVDF 201
R+ + D D DL L ++
Sbjct: 90 KRQDIVDVDP--DLLLQEY 106
>Z92822-3|CAB07302.3| 774|Caenorhabditis elegans Hypothetical
protein ZK520.4b protein.
Length = 774
Score = 27.5 bits (58), Expect = 9.4
Identities = 23/79 (29%), Positives = 38/79 (48%)
Frame = -3
Query: 437 ICVQAHPAISYWL**KPSSCICTSFCRSDVDSLQTYAPPRQSKERVVHEGSQCIQQHRHK 258
+ VQ P+I + +P + + SDV + P S ER+ +E CIQ+H +
Sbjct: 14 VWVQLRPSIIDIINLRPITNVQWHHKFSDVYDICVSIPTPLS-ERLYNEVKACIQEHVRQ 72
Query: 257 PRRSLDDGDSLHDLFLVDF 201
R+ + D D DL L ++
Sbjct: 73 KRQDIVDVDP--DLLLQEY 89
>Z92822-2|CAB70188.2| 850|Caenorhabditis elegans Hypothetical
protein ZK520.4a protein.
Length = 850
Score = 27.5 bits (58), Expect = 9.4
Identities = 23/79 (29%), Positives = 38/79 (48%)
Frame = -3
Query: 437 ICVQAHPAISYWL**KPSSCICTSFCRSDVDSLQTYAPPRQSKERVVHEGSQCIQQHRHK 258
+ VQ P+I + +P + + SDV + P S ER+ +E CIQ+H +
Sbjct: 90 VWVQLRPSIIDIINLRPITNVQWHHKFSDVYDICVSIPTPLS-ERLYNEVKACIQEHVRQ 148
Query: 257 PRRSLDDGDSLHDLFLVDF 201
R+ + D D DL L ++
Sbjct: 149 KRQDIVDVDP--DLLLQEY 165
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,856,708
Number of Sequences: 27780
Number of extensions: 363045
Number of successful extensions: 1008
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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