Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV41008
         (685 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   2.7  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   6.3  
DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.              21   8.3  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   8.3  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 238 MVTASTISFLLIFEPGRSGSLTTWVI 161
           MV   TI +++IF  G  G++TT  +
Sbjct: 39  MVIPLTIIYMIIFVTGIFGNITTCTV 64


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
 Frame = +1

Query: 499 HSNELLKQRQK-KAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIGVT 672
           H +   KQ  + K H  +    GGT+E+ +    +    P P   +    ++    G+T
Sbjct: 280 HGDHAPKQTVRFKVHDPKAHSKGGTLENTINGRADEEAAPAPQHLIHPGKDINKLYGMT 338


>DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 257 VCVGVVGYIETPHGLRALLTV 319
           VCVG +   E   GLRA++ V
Sbjct: 12  VCVGALTLEELQIGLRAVIPV 32


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 429 PSSSCHFLLALVKAFFLHL 373
           P+ S H+LLAL+   F  L
Sbjct: 43  PNPSLHYLLALLYILFTFL 61


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,278
Number of Sequences: 438
Number of extensions: 3871
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)