Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40998
         (878 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             27   0.30 
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    25   0.70 
X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor pro...    23   3.7  
AF442148-1|AAL35349.1|  199|Apis mellifera apidaecin precursor p...    23   3.7  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    22   6.5  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   8.6  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 26.6 bits (56), Expect = 0.30
 Identities = 13/50 (26%), Positives = 29/50 (58%)
 Frame = +1

Query: 7    HPLGDVQCRRHRPGEERSRHQQPEEESQRPHRRQLPGR*PPAVRLRRQQP 156
            H     Q ++ +  +++ + QQP+++SQ+P ++Q P       + ++QQP
Sbjct: 1495 HSSQKTQQQQPQQQQQQQQQQQPQQQSQQPQQQQ-PQPQQQQQQQQQQQP 1543


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 25.4 bits (53), Expect = 0.70
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +1

Query: 40  RPGEERSRHQ-QPEEESQRPHRRQLPGR*PPAVRLRRQQPLH*DAGD 177
           RP   R R + +PE E        +P   PP  RLRR+  L  + G+
Sbjct: 53  RPPHPRLRREAEPEAEPGNNRPVYIPQPRPPHPRLRREAELEAEPGN 99



 Score = 25.4 bits (53), Expect = 0.70
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +1

Query: 40  RPGEERSRHQ-QPEEESQRPHRRQLPGR*PPAVRLRRQQPLH*DAGD 177
           RP   R R + +PE E        +P   PP  RLRR+  L  + G+
Sbjct: 109 RPPHPRLRREAEPEAEPGNNRPVYIPQPRPPHPRLRREAELEAEPGN 155



 Score = 23.0 bits (47), Expect = 3.7
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = +1

Query: 40  RPGEERSRHQ-QPEEESQRPHRRQLPGR*PPAVRLRRQ 150
           RP   R R + +PE E        +P   PP  RLRR+
Sbjct: 165 RPPHPRLRREAEPEAEPGNNRPVYIPQPRPPHPRLRRE 202



 Score = 23.0 bits (47), Expect = 3.7
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = +1

Query: 40  RPGEERSRHQ-QPEEESQRPHRRQLPGR*PPAVRLRRQ 150
           RP   R R + +PE E        +P   PP  RLRR+
Sbjct: 193 RPPHPRLRREAEPEAEPGNNRPVYIPQPRPPHPRLRRE 230



 Score = 23.0 bits (47), Expect = 3.7
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = +1

Query: 40  RPGEERSRHQ-QPEEESQRPHRRQLPGR*PPAVRLRRQ 150
           RP   R R + +PE E        +P   PP  RLRR+
Sbjct: 221 RPPHPRLRREAEPEAEPGNNRPVYIPQPRPPHPRLRRE 258


>X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor
           protein.
          Length = 144

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = +1

Query: 40  RPGEERSRHQ-QPEEESQRPHRRQLPGR*PPAVRLRRQ 150
           RP   R R + +PE E        +P   PP  RLRR+
Sbjct: 54  RPPHPRLRREAEPEAEPGNNRPVYIPQPRPPHPRLRRE 91



 Score = 23.0 bits (47), Expect = 3.7
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = +1

Query: 40  RPGEERSRHQ-QPEEESQRPHRRQLPGR*PPAVRLRRQ 150
           RP   R R + +PE E        +P   PP  RLRR+
Sbjct: 82  RPPHPRLRREAEPEAEPGNNRPVYIPQPRPPHPRLRRE 119



 Score = 21.8 bits (44), Expect = 8.6
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +1

Query: 40  RPGEERSRHQQPEEESQRPHRRQLPGR*PPAVRLRRQ 150
           RP   R R  +PE E        +P   PP  RLRR+
Sbjct: 28  RPTRLR-REAEPEAEPGNNRPVYIPQPRPPHPRLRRE 63


>AF442148-1|AAL35349.1|  199|Apis mellifera apidaecin precursor
           protein.
          Length = 199

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = +1

Query: 40  RPGEERSRHQ-QPEEESQRPHRRQLPGR*PPAVRLRRQ 150
           RP   R R + +PE E        +P   PP  RLRR+
Sbjct: 25  RPPHPRLRREAEPEAEPGNNRPVYIPQPRPPHPRLRRE 62



 Score = 23.0 bits (47), Expect = 3.7
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = +1

Query: 40  RPGEERSRHQ-QPEEESQRPHRRQLPGR*PPAVRLRRQ 150
           RP   R R + +PE E        +P   PP  RLRR+
Sbjct: 53  RPPHPRLRREAEPEAEPGNNRPVYIPQPRPPHPRLRRE 90



 Score = 23.0 bits (47), Expect = 3.7
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = +1

Query: 40  RPGEERSRHQ-QPEEESQRPHRRQLPGR*PPAVRLRRQ 150
           RP   R R + +PE E        +P   PP  RLRR+
Sbjct: 81  RPPHPRLRREAEPEAEPGNNRPVYIPQPRPPHPRLRRE 118



 Score = 23.0 bits (47), Expect = 3.7
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = +1

Query: 40  RPGEERSRHQ-QPEEESQRPHRRQLPGR*PPAVRLRRQ 150
           RP   R R + +PE E        +P   PP  RLRR+
Sbjct: 109 RPPHPRLRREAEPEAEPGNNRPVYIPQPRPPHPRLRRE 146



 Score = 22.6 bits (46), Expect = 4.9
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = +1

Query: 40  RPGEERSRHQ-QPEEESQRPHRRQLPGR*PPAVRLRRQ 150
           RP   R R + +PE E        +P   PP  RLRR+
Sbjct: 137 RPPHPRLRREAKPEAEPGNNRPVYIPQPRPPHPRLRRE 174


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +1

Query: 40  RPGEERSRHQQPEEESQRPHRRQLPGR*PPAVRLRRQ 150
           RP   R R  +PE E        +P   PP  RLRR+
Sbjct: 28  RPARLR-REAKPEAEPGNNRPIYIPQPRPPHPRLRRE 63


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 58  SRHQQPEEESQRPHRRQLPGR*P 126
           +R    EEE+Q+P  + +P   P
Sbjct: 137 AREDNDEEEAQKPKEQYIPPELP 159


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,836
Number of Sequences: 438
Number of extensions: 5011
Number of successful extensions: 27
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)