Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40997
         (805 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation fac...    58   1e-09
SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit Ssr3|Schizos...    44   3e-05
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    28   1.8  
SPCC188.02 |par1||protein phosphatase regulatory subunit Par1 |S...    27   2.4  
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu...    25   9.5  

>SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation factor
           complex subunit Spp27|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 233

 Score = 58.0 bits (134), Expect = 1e-09
 Identities = 23/51 (45%), Positives = 35/51 (68%)
 Frame = +3

Query: 102 KLSPALSELMGAEEMPRHEVVKRMWALIKERNLYDPNNKRFVICDKDMHKV 254
           KLSP L+E +G E++ R + VK++W  IK  +L DPN+KR ++CD  +  V
Sbjct: 122 KLSPKLAEFLGLEQLSRPQTVKKLWEYIKAHDLQDPNDKRTILCDDKLKSV 172


>SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit
           Ssr3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 425

 Score = 43.6 bits (98), Expect = 3e-05
 Identities = 19/47 (40%), Positives = 26/47 (55%)
 Frame = +3

Query: 99  YKLSPALSELMGAEEMPRHEVVKRMWALIKERNLYDPNNKRFVICDK 239
           YKLS A + ++G  E  R ++V  +W  IK   L D   KR + CDK
Sbjct: 206 YKLSKAFANILGIREGTRPDIVSYLWQYIKFHRLQDMEEKRLINCDK 252


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = -2

Query: 786  FWKISIKVSNR--KNVEEGDGVKETDRYLRT 700
            FW + I+VS    K  ++G  VK  +RYLRT
Sbjct: 942  FWPLIIRVSESAFKMHKDGHNVKVVERYLRT 972


>SPCC188.02 |par1||protein phosphatase regulatory subunit Par1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 548

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 326 HTRLLYDCMMRFFFEHFANILLRGIYLSERF 418
           H  L+YD  +RFF     N  +  +Y++++F
Sbjct: 212 HLHLVYDFFLRFFESPSLNTSVAKVYINQKF 242


>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 558 DGKWLPSPMDFSNARSRPSRCILQPSRC 475
           D  +LP P+  SN  + PS C    + C
Sbjct: 301 DSSYLPHPIQLSNYFTLPSSCAQADAAC 328


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,091,453
Number of Sequences: 5004
Number of extensions: 63974
Number of successful extensions: 136
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)