Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40994
         (801 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    29   0.77 
SPAC13G6.13 ||SPAC24B11.02|sequence orphan|Schizosaccharomyces p...    27   2.3  
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    27   3.1  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    26   5.4  
SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces p...    26   7.2  
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch...    26   7.2  
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    26   7.2  
SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos...    25   9.5  

>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1213

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 5/46 (10%)
 Frame = -1

Query: 270 IR*FRTSGAINNTINKVGSNDEF----ENIQTAILKKDVI-VLQSH 148
           IR  R+S A+ N INK  SND F     + + A+L K+ + V++SH
Sbjct: 729 IRRGRSSRALTNLINKNESNDSFMEDLRDFKIAMLPKETVQVVRSH 774


>SPAC13G6.13 ||SPAC24B11.02|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 115

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
 Frame = -3

Query: 181 FKKRRNCFT-ISFRN*ESHRKNSEKGQKNRQIAKEKGLG*C--FWIFQWN 41
           + KRRNC+T + F+  ES + N  K +K+ ++ ++     C  F I +W+
Sbjct: 17  YYKRRNCYTLLIFKYKESKKINVYKRKKSDEVVEDCNKLKCTFFMIEEWH 66


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 601 HFDYSNYSCSNTLDYWESKCP 663
           HF +SN SC+ +L Y+ES  P
Sbjct: 698 HFLFSNGSCNTSLCYYESTDP 718


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +3

Query: 3   FLNLILSFCLMLLFHWKIQK--H*PRPFSFAICRFFC 107
           FL++ LS CL L + W I+      R F   + RFFC
Sbjct: 253 FLSIGLSVCLELWYLWDIKTGLTVERFFQHFLARFFC 289


>SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 438

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -1

Query: 795 KVKRYNRVEDIRYY 754
           +V RYN +ED++YY
Sbjct: 186 RVLRYNNIEDLKYY 199


>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
           subfamily|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 887

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 795 KVKRYNRVEDIRYYSNKDKTNISKH 721
           ++K+  RV+ +  Y NKD+TN  KH
Sbjct: 735 ELKKRERVKSVNDY-NKDETNFRKH 758


>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
 Frame = +3

Query: 6   LNLILSFCLMLLFHW-KIQKH*P--RPFSFAICRFFCPFSEFFRCDSQFLNEIVKQLRLF 176
           L L  SF L    HW   +K     RPFSF +   FC  + ++   S     +   L L 
Sbjct: 378 LILAASFMLGAYRHWINHEKKIDLWRPFSFWLFSIFCTIAAYYLVSSSTKITVFIFLYLM 437

Query: 177 LKWLSVCF 200
           L ++ + F
Sbjct: 438 LTFIGIIF 445


>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 467

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 3   FLNLILSFCLMLLFHWKIQ 59
           F + +L++CL  LF+W  Q
Sbjct: 297 FFDAVLAYCLSQLFNWSCQ 315


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,581,685
Number of Sequences: 5004
Number of extensions: 44905
Number of successful extensions: 157
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)