Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40994
         (801 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024822-1|AAF59593.1|  117|Caenorhabditis elegans Hypothetical ...    30   2.2  
AF024503-1|AAG24089.2|  527|Caenorhabditis elegans Hypothetical ...    29   3.9  
Z81068-6|CAB02986.1|  725|Caenorhabditis elegans Hypothetical pr...    28   6.8  
U39993-1|AAA81086.1|  594|Caenorhabditis elegans Hypothetical pr...    28   8.9  

>AC024822-1|AAF59593.1|  117|Caenorhabditis elegans Hypothetical
           protein Y55B1BL.1 protein.
          Length = 117

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
 Frame = -3

Query: 730 IKAPEKEKVLDQHH-----NKQSQNSSGDTLIPNNQECLSKNSLSNQNEKSP 590
           +  P+ E  L+Q +     NK S  +  D L+PNN +C S +  ++    SP
Sbjct: 46  VNFPDIENELEQQYQYVMNNKNSTRNMKDHLVPNNSKCSSDDEDNSSTISSP 97


>AF024503-1|AAG24089.2|  527|Caenorhabditis elegans Hypothetical
           protein F31F4.7 protein.
          Length = 527

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = -1

Query: 255 TSGAINNTINKVGSNDEFENIQTAILKKDVIVLQSHSETESHTEKTPKKD 106
           T    N T+  +  + +F NI    L KD++V+++ +E +   E     D
Sbjct: 44  TEAGHNVTVLSIIVSSKFRNISYTKLTKDIVVVETTNEQDQQAENMENND 93


>Z81068-6|CAB02986.1|  725|Caenorhabditis elegans Hypothetical
           protein F25H5.5 protein.
          Length = 725

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 147 SETESHTEKTPKKDRKIGRLQRKKALA 67
           S   +  +K  ++DRK+ RL R+KALA
Sbjct: 10  SSENTEVDKQAEEDRKLRRLNRRKALA 36


>U39993-1|AAA81086.1|  594|Caenorhabditis elegans Hypothetical
           protein F47E1.3 protein.
          Length = 594

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -2

Query: 512 TEKRKNENSTKFDEILQDVATHNKNEQNGLDKDR 411
           TE RK+E   +  EI+ DVA  N+N  NG   +R
Sbjct: 436 TEDRKSE--VEEPEIIDDVAKKNENVSNGFSCER 467


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,181,781
Number of Sequences: 27780
Number of extensions: 248967
Number of successful extensions: 988
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)