Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40990
         (649 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   1.9  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   2.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.5  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   4.4  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   7.8  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   7.8  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 13/39 (33%), Positives = 14/39 (35%)
 Frame = -3

Query: 647 HH*M*TQCPTNASGDPRAVDSRPDRIPRQFPHHHHGHLP 531
           HH      P +    P A  S P  I      HHH H P
Sbjct: 432 HHHSHAATPHHQHSTPLAHSSYPAAIQIGHTPHHHPHPP 470



 Score = 23.0 bits (47), Expect = 2.5
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = -3

Query: 557 PHHHHGH 537
           PHHHH H
Sbjct: 430 PHHHHSH 436


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +1

Query: 415 MNTRLYATLNAPLR 456
           +NTRL ATLN  LR
Sbjct: 132 LNTRLQATLNCGLR 145


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -2

Query: 447  CVERCVKPCIHRVSTHAVLPQRALHVQFQALV 352
            C+     PC+ R ST A +   A+H   + L+
Sbjct: 1098 CLHHRDLPCVLRASTPAPVVLEAVHASRRVLI 1129


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = -3

Query: 557 PHHHHGH 537
           PHHHH H
Sbjct: 350 PHHHHHH 356


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -1

Query: 232 SCRLISHRFCQSRIFGRTHVCLY 164
           S  +I+   C S I GRTH   Y
Sbjct: 136 SAVVITAAICTSGIVGRTHTVGY 158


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 374 TFSFRHLSIASAGFRSLLFSSFT 306
           +FS R L +  AGF  ++ +S+T
Sbjct: 633 SFSARVLGMVWAGFAMIIVASYT 655


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,967
Number of Sequences: 438
Number of extensions: 2495
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)