Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40988
         (285 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   0.73 
DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              23   0.97 
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   3.0  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   3.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    20   6.8  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    19   9.0  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    19   9.0  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 0.73
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +1

Query: 205 HRHQRQDAHPHRG 243
           H+H     HPHRG
Sbjct: 319 HQHHPSQYHPHRG 331


>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 22.6 bits (46), Expect = 0.97
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +2

Query: 26  SYQQLRQIFAEYEALTGKDIE--DSIKKEFSGSIEKGMLAIAKCVKSKVGF 172
           S  +LR+I +      G D++  D +KK      ++ +     C+  KVGF
Sbjct: 22  SINKLRKIESVCAEENGIDLKKADDVKKGIFDKNDEKLACYVDCMLKKVGF 72


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.0 bits (42), Expect = 3.0
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +1

Query: 181 APVLLDEGHRHQRQDAHPH 237
           +P L++    HQ    HPH
Sbjct: 160 SPPLVESQMHHQMHTQHPH 178


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.0 bits (42), Expect = 3.0
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 79  FSGQSFVLGEDLSQLLIGASDKDGV 5
           F G+  + G+DL    I A D +GV
Sbjct: 288 FFGEKALQGDDLRTANIIADDPEGV 312


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 19.8 bits (39), Expect = 6.8
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +1

Query: 187 VLLDEGHRHQRQDAHPHRGEPLRIDLGDIKQ 279
           +LL+   R  R+D HP       I L D+ Q
Sbjct: 150 MLLEHKKRRARRDIHPELNTQ-GIALADLTQ 179


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 19.4 bits (38), Expect = 9.0
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +1

Query: 193 LDEGHRHQRQDAHPHRGEPLRIDLGD 270
           LD+G    R DA PH  E   I L +
Sbjct: 220 LDKGIDGFRIDAVPHLFESANISLDE 245


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 19.4 bits (38), Expect = 9.0
 Identities = 5/11 (45%), Positives = 10/11 (90%)
 Frame = +1

Query: 235 HRGEPLRIDLG 267
           H+G+P+R+ +G
Sbjct: 576 HKGKPIRMRIG 586


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,968
Number of Sequences: 438
Number of extensions: 1055
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5619645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)