Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40987
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.57 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.57 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    25   0.57 
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   3.1  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   3.1  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   3.1  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 25.4 bits (53), Expect = 0.57
 Identities = 10/33 (30%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +1

Query: 331 DKSYSC--EPALNVTFQYGGLKTFLYYSIRFVV 423
           +K Y+C  EP L++TF     +  L+Y++  ++
Sbjct: 221 EKFYTCCDEPYLDITFNITMRRKTLFYTVNIII 253


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 25.4 bits (53), Expect = 0.57
 Identities = 10/33 (30%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +1

Query: 331 DKSYSC--EPALNVTFQYGGLKTFLYYSIRFVV 423
           +K Y+C  EP L++TF     +  L+Y++  ++
Sbjct: 221 EKFYTCCDEPYLDITFNITMRRKTLFYTVNIII 253


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 25.4 bits (53), Expect = 0.57
 Identities = 10/33 (30%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +1

Query: 331 DKSYSC--EPALNVTFQYGGLKTFLYYSIRFVV 423
           +K Y+C  EP L++TF     +  L+Y++  ++
Sbjct: 217 EKFYTCCDEPYLDITFNITMRRKTLFYTVNLII 249


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -2

Query: 368 VTLRAGSHE*DLSSNEQPYFSRVVL 294
           VTLR GS+  +  S+E P+ +  ++
Sbjct: 550 VTLRPGSNSIERQSSESPFTTSTIM 574


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -2

Query: 368 VTLRAGSHE*DLSSNEQPYFSRVVL 294
           VTLR GS+  +  S+E P+ +  ++
Sbjct: 550 VTLRPGSNSIERQSSESPFTTSTIM 574


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = -3

Query: 427 RRRQIVSNNIKTFLVRHIEMLH*GLVHTNKIYRATSNLIFHE 302
           R+RQ ++N+    ++RH++       H   +Y+   N+I  E
Sbjct: 335 RKRQKINNSQNALVLRHVQAE--AEKHAAMLYQYNFNIIISE 374


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,401
Number of Sequences: 438
Number of extensions: 3635
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)