Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40984
         (840 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    23   3.5  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   6.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   8.1  

>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 101 LWLNSAREQIKSENPGLRV 157
           +W  + R + K +NPGL V
Sbjct: 54  IWFQNRRTKWKKQNPGLDV 72


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 7/35 (20%), Positives = 19/35 (54%)
 Frame = +2

Query: 734 SLKKIMCKCYLYFTRELYS*PSLVKFAVTLWMLIL 838
           ++++ +  C+ + +  +      VKF + +W+L L
Sbjct: 149 TVERYIAICHPFISHTMSKLSRAVKFIIVIWLLAL 183


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -1

Query: 633  ILNQEMNYLIAFYKQNTSCS*R*FQLSLNVNQNQCQMHFIQ 511
            IL    N L+ F     + + R  +LSL  N   C+  F+Q
Sbjct: 894  ILRLSGNRLVTFPVWQVTLNARLVELSLGSNPWSCRCKFLQ 934


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,693
Number of Sequences: 438
Number of extensions: 3432
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26945694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)