Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40982
         (864 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    23   2.7  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    23   2.7  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   6.3  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    22   8.4  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    22   8.4  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   8.4  

>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 647 DQGNLVHNPKMSMFPYILV 703
           D+GNLV+ P ++ + Y L+
Sbjct: 60  DKGNLVNEPSITCYMYCLL 78


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 647 DQGNLVHNPKMSMFPYILV 703
           D+GNLV+ P ++ + Y L+
Sbjct: 60  DKGNLVNEPSITCYMYCLL 78


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -3

Query: 148 SSFSLVVLGTFPLIVMFLLAISLAIRILCL 59
           +S ++ +LGT+   +MF++A S+   IL L
Sbjct: 287 TSDAVPLLGTYFNCIMFMVASSVVSTILIL 316


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -3

Query: 772 YNR*GNEFFDIY*MLLNINYFTLYKN 695
           YN   N + + Y    N NY  LYKN
Sbjct: 94  YNNYNNNYNNNYNNNYNNNYKKLYKN 119


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -3

Query: 772 YNR*GNEFFDIY*MLLNINYFTLYKN 695
           YN   N + + Y    N NY  LYKN
Sbjct: 94  YNNYNNNYNNNYNNNYNNNYKKLYKN 119


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 5/17 (29%), Positives = 11/17 (64%)
 Frame = -2

Query: 713 FYIIQEYMETLTFWDYE 663
           FY + E ++ +  WD++
Sbjct: 103 FYFVHESLKNVLLWDFQ 119


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 243,448
Number of Sequences: 438
Number of extensions: 5434
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27916710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)