Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40979
(860 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 28 2.0
SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces... 27 4.5
SPAC1782.04 |cox24||mitochondrial mRNA processing protein Cox24 ... 27 4.5
SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|ch... 27 4.5
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 26 6.0
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo... 26 6.0
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S... 26 6.0
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 26 6.0
SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 7.9
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 26 7.9
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 27.9 bits (59), Expect = 2.0
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +1
Query: 256 KQTCDWKDAVKNCKLKNKERKIKPLLYTEEPLCQ-DGFL 369
+Q K +KN K+KN ++KPLL TE CQ D FL
Sbjct: 149 EQLIQIKVCMKNEKMKNLMEQLKPLLQTE---CQFDKFL 184
>SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 558
Score = 26.6 bits (56), Expect = 4.5
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 482 LRHAIPRSVPSXXXXXRGRHSDPRRLTRQRCPSNDHYHLR 601
+RHA+P + + RG SD +++ + PS D HL+
Sbjct: 41 VRHALPVAAATGADVSRGFKSDSKQMAME--PSLDEIHLK 78
>SPAC1782.04 |cox24||mitochondrial mRNA processing protein Cox24
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 175
Score = 26.6 bits (56), Expect = 4.5
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 208 GNTSYTLPGRFVLRYWKQTCDWKDAVKNCKLKNKERKIK 324
G+ + T P R + W+Q CD ++ L + +RK K
Sbjct: 113 GSVTQTQPARISTQVWEQICDKLISITPLDLTSVKRKRK 151
>SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|chr
2|||Manual
Length = 257
Score = 26.6 bits (56), Expect = 4.5
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +3
Query: 6 VSLLWPRASCSPARLLMVTD 65
V+ +W R +CSP+RL +T+
Sbjct: 211 VTQVWERGTCSPSRLSFLTE 230
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 26.2 bits (55), Expect = 6.0
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Frame = -3
Query: 441 RSIATVLFAVTEKTAFNASRVAASEEAILTEWFFSV-----QERLYFTLLVLELTIFHSI 277
RS++T ++ ++N S + EE +LT WF S+ FT+L+L+ + + I
Sbjct: 1384 RSLSTTFYSFL--ISYNDSFIKKHEEKVLTVWFESLGALDEDHAAQFTILLLQKNLKNPI 1441
>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1010
Score = 26.2 bits (55), Expect = 6.0
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = -3
Query: 288 FHSIFPIAGLFPISKNKPAGQRIACIPEAVHWM 190
FH P++ P GQRI C+ A W+
Sbjct: 534 FHPFDPVSKKITAYVEAPDGQRITCVKGAPLWV 566
>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
Mde10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 512
Score = 26.2 bits (55), Expect = 6.0
Identities = 12/35 (34%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Frame = +1
Query: 427 CGDG--SDENSCDIDNDPNRAPPCDSSQCAFLTAS 525
CG+G D CD D P CD C S
Sbjct: 318 CGNGIVEDGEECDCGEDCENNPCCDGKTCKLTKGS 352
>SPAC343.11c |msc1||multi-copy suppressor of Chk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1588
Score = 26.2 bits (55), Expect = 6.0
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +1
Query: 250 YWKQTCDWKDAV-KNCKLKNKERKIKPLL-YTEEPLCQDGFLAC 375
YW TC KD V + L+N+ RK PLL + PL + +AC
Sbjct: 675 YWLMTC-LKDRVDRELTLRNEFRKRHPLLTWIPTPL-ESSVMAC 716
>SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 25.8 bits (54), Expect = 7.9
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -2
Query: 523 KQSGRHTARNRMAELYLGRCQYHKNFHQIHRH 428
K+S + L L C++ KN HQ+H H
Sbjct: 240 KRSNTDVDNSSSLSLTLPLCKFTKNGHQVHIH 271
>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1096
Score = 25.8 bits (54), Expect = 7.9
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = -3
Query: 687 P*YRNRSGFCACR*ISLCTIQCCYC*SHH 601
P ++ ++ C C I LC I C+ +H
Sbjct: 1033 PIWKKKTYVCLCTTIGLCNIYLCFANENH 1061
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,489,171
Number of Sequences: 5004
Number of extensions: 73236
Number of successful extensions: 225
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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