Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40979
         (860 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    27   0.29 
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    26   0.51 
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   2.7  
M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    23   4.8  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    22   8.4  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    22   8.4  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    22   8.4  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 26.6 bits (56), Expect = 0.29
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -2

Query: 550  GITVPSSEQKQSGRHTARNRMA 485
            GIT+ ++E     R TARNRMA
Sbjct: 1119 GITLRTAEVHNRSRETARNRMA 1140


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 25.8 bits (54), Expect = 0.51
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -2

Query: 475 LGRCQYHKNFHQIHRHSPFRRYRKDRVQCK*SRRKRGSHLDRVVLQ 338
           L   + HK+ +   +HS   + RK+  Q +   R++  H DRV  Q
Sbjct: 45  LNSLRNHKSIYH-RQHSKNEQQRKEMEQMREREREQREHSDRVTSQ 89


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 599 EGDSDHLRDISGG*VAGDHCAVLGAEAV 516
           + D D + D++G     DH A +GA+A+
Sbjct: 42  DSDGDGIGDLNGITARMDHIADIGADAL 69


>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 405 KTAFNASRVAASEEAILTEWFFSVQERLYFTL 310
           +TAF   ++ A E    T  + SV ERL   L
Sbjct: 12  RTAFTYEQLVALENKFKTTRYLSVCERLNLAL 43


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 262 SVSNIEEQTGRATYSLYSRGSTLDDVATVVALAG 161
           SVS+      R+T   +++ S +DD  T V + G
Sbjct: 253 SVSSETNHNERSTPRSHAKPSLIDDEPTEVTIGG 286


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 262 SVSNIEEQTGRATYSLYSRGSTLDDVATVVALAG 161
           SVS+      R+T   +++ S +DD  T V + G
Sbjct: 253 SVSSETNHNERSTPRSHAKPSLIDDEPTEVTIGG 286


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 262 SVSNIEEQTGRATYSLYSRGSTLDDVATVVALAG 161
           SVS+      R+T   +++ S +DD  T V + G
Sbjct: 253 SVSSETNHNERSTPRSHAKPSLIDDEPTEVTIGG 286


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 241,132
Number of Sequences: 438
Number of extensions: 5378
Number of successful extensions: 22
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)