Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40975
         (657 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1142.07c |vps32|snf7|vacuolar sorting protein Vps32|Schizosa...    52   7e-08
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    28   1.0  
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    28   1.4  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    27   3.1  
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...    26   5.5  
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   7.3  
SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||...    25   7.3  
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa...    25   9.6  

>SPAC1142.07c |vps32|snf7|vacuolar sorting protein
           Vps32|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 222

 Score = 52.0 bits (119), Expect = 7e-08
 Identities = 26/78 (33%), Positives = 42/78 (53%)
 Frame = +2

Query: 275 KKQEFLEKKIDLEVQTARKHGTKNXXXXXXXXXXXXXYEKQLTQIDGTLTQIEAQREALE 454
           KK+E LE++I  + + ARK+ T N             +E +L +I+G+   IE Q  +++
Sbjct: 33  KKEEVLERQIAEQTEIARKNATTNKRLALTALKRKKMHENELVKIEGSRNNIEQQLFSIQ 92

Query: 455 GANTNAQVLNTMREAANA 508
            AN N + L  MR+ A A
Sbjct: 93  NANLNFETLQAMRQGAEA 110



 Score = 44.8 bits (101), Expect = 1e-05
 Identities = 22/59 (37%), Positives = 34/59 (57%)
 Frame = +1

Query: 475 SIEHYARGS*CLKLAHKDIDVDKVHDIMDDIAEQHDISREITEAISNNVAFPNDIDEDD 651
           +++   +G+  +K   + +D DKV  IMD I +Q  IS EI+  IS  V    +IDED+
Sbjct: 100 TLQAMRQGAEAMKSIQRGMDADKVDQIMDKIRDQQTISEEISTMISTPVGLNAEIDEDE 158


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1639

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +1

Query: 244  KNSVNRRIADQEARVFGKEDRFRSTDSQETWH*EQKSC 357
            + + N +      + F  E RFRSTD    WH  +  C
Sbjct: 914  EGTFNNQDESNGTKTFAAEIRFRSTDGHYRWHLVKSVC 951


>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1052

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
 Frame = +1

Query: 538 DKVHDIMDDIAEQHDISREI----TEAISNNVAFPNDIDEDD 651
           DKV +++D+  E  DIS++I    T A+ + V   N I +D+
Sbjct: 874 DKVTELIDEAEENIDISQDISMTETNAVDDEVQAENSILQDE 915


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
            Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +2

Query: 182  SRENIRWQKRREGAHYA*SYPKTP*TEELLIKKQEFLEKKIDLEVQTARKH 334
            S E  R +K  EG++     P +P T    IK+  F+ +++   +  A KH
Sbjct: 866  SCETQRSRKSHEGSNDLERQPSSPDTVHPGIKRSHFIRERVKQLLSDANKH 916


>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
           Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = -1

Query: 627 EGHIVTDRLGDLTRDIVLFSNIIHDIVYFVHIDVFVCEL-QALAASRIVFNT-WA 469
           EG IV + + + T  I L+ ++   +VY  H+DV   E+      +RIV  T W+
Sbjct: 438 EGEIVREFVKE-TDTITLYKSMREVLVYLTHLDVVDTEIVMTEKLARIVVGTEWS 491


>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 500

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 8/18 (44%), Positives = 15/18 (83%), Gaps = 1/18 (5%)
 Frame = +2

Query: 518 HTKTSMWTKYTI-SWMIL 568
           H+K ++W +YT+ SW++L
Sbjct: 250 HSKNAVWNQYTVASWVML 267


>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 465

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = -1

Query: 300 FFSKNSCFLISNSSVYGVFG*LHA*WAPSLLFCHRIFSRENSFWKPLIL 154
           FFS    FL+S S V G  G      AP +   ++IFS  NS  +  I+
Sbjct: 188 FFSALLVFLVSRSWVAGQLG-----QAPEVWLFNQIFSHRNSLTRIKII 231


>SPBC244.01c |sid4||SIN component scaffold protein Sid4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +2

Query: 395 QLTQIDGTLTQIEAQREALEGANTNAQVL-NTMREAANA*SSHTKTSMWTKYT 550
           QL+ +D  L Q E  R+ L  A    Q+L +T +      +  +K ++ TK T
Sbjct: 430 QLSTLDAILLQFEHLRKELTQARKEIQILRHTSQNGDQESNESSKNAITTKTT 482


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,275,423
Number of Sequences: 5004
Number of extensions: 44902
Number of successful extensions: 130
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)