Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40974
         (787 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyce...    27   2.3  
SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyce...    27   4.0  
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces...    27   4.0  
SPAC1006.05c |och1||alpha-1,6-mannosyltransferase Och1 |Schizosa...    27   4.0  
SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase Dld1|Schi...    26   5.3  
SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces pomb...    26   7.0  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    25   9.3  

>SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 254

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = +2

Query: 320 DNLPALTPLRDIV---VYEGQPAQFKTQITSKIKPTIQWLR 433
           ++ P L P R I    +Y+ +   FK    SK  P +QWLR
Sbjct: 199 ESYPELNPKRSIPCGKIYQPRIYGFKVSELSKTGPRMQWLR 239


>SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 764 EVRSRINNRPLNTPVNFPTSNNSSFHPIS 678
           E  S INN PL  PV+     N+  +P+S
Sbjct: 197 EASSSINNTPLQAPVSSFADQNAFTNPLS 225


>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 693

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 196 NTPCVYQKLSRKTKGTTNVCI*LGWSCDCRC 288
           N   + Q+LS+   G  +VC+ LG S + RC
Sbjct: 155 NAAIIRQELSKVAHGIFSVCVSLGISPNIRC 185


>SPAC1006.05c |och1||alpha-1,6-mannosyltransferase Och1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 396

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
 Frame = -3

Query: 344 EVSGLEDYQPGRAVSLSVSQRQS----HDQPSYM 255
           E+S LEDY P  A    V Q++     +DQPSY+
Sbjct: 36  EISMLEDYTPEAANKDYVGQQEEEELLYDQPSYI 69


>SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase
           Dld1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +1

Query: 502 NRDTYEEDTGTFTCRATTAAGQVETSAKLVVKSKT*IQAASSRRAPF 642
           N+  Y + TG+F    T +   ++ +A   +K+K  I A  S   PF
Sbjct: 148 NKVEYAKGTGSFIDPQTLSVKGIDGAADQTIKAKNFIIATGSEVKPF 194


>SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 392

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = +1

Query: 82  LLSSAVRSLGNLFQQYSGTRVIN*LNHQNTSKCRGLLMNTPCVYQKLS 225
           +++ A  SL NL++    T V++  +HQN +    LL+N   +Y  LS
Sbjct: 153 MMTHAQASLFNLYEGRWWTLVVSIFSHQNLAH---LLVNCVAIYSFLS 197


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 767 YEVRSRINNRPLNTPVNFPTSNNSS 693
           Y + +   N+PL+ P   P+SN+SS
Sbjct: 165 YGIMASATNQPLSHPTIVPSSNSSS 189


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,215,576
Number of Sequences: 5004
Number of extensions: 67759
Number of successful extensions: 158
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)