Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40973
(711 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 108 9e-25
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 108 9e-25
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc... 29 0.66
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 2.0
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr... 27 3.5
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 27 3.5
SPAC31G5.14 |gcv1|n313|glycine decarboxylase T subunit|Schizosac... 25 8.1
SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr 3... 25 8.1
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 108 bits (259), Expect = 9e-25
Identities = 48/82 (58%), Positives = 59/82 (71%)
Frame = +3
Query: 9 QKKAHIMEIQLNGGTIEDKVKWAREHLEXPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSR 188
QKKAH+MEIQ+NGG++ DKV+WAREH E + + S F Q+EMID I +R
Sbjct: 173 QKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTAR 232
Query: 189 WHTKKLPRKTHKGLRKVACIXA 254
W TK+LPRKTH+GLRKVACI A
Sbjct: 233 WGTKRLPRKTHRGLRKVACIGA 254
Score = 104 bits (249), Expect = 1e-23
Identities = 50/85 (58%), Positives = 59/85 (69%)
Frame = +2
Query: 251 SWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSIT 430
+WHP+ V +TVARAG GY HRT++N KIYRIG G D K NAST++D +EK IT
Sbjct: 254 AWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAG---DDAK----NASTDFDATEKRIT 306
Query: 431 PMGGFPHYGEVNNDFVMIKGCCMGP 505
PMGGF YG V NDFVM+ G GP
Sbjct: 307 PMGGFVRYGVVENDFVMLNGATPGP 331
Score = 85.0 bits (201), Expect = 9e-18
Identities = 39/61 (63%), Positives = 47/61 (77%)
Frame = +1
Query: 487 GLLHGT*KRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQMPADKAAFMGTLKK 666
G G KR++TLRKSL HT R ALE ++LK+IDT+SKFGHGRFQ PA+ F+GTLKK
Sbjct: 326 GATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKK 385
Query: 667 D 669
D
Sbjct: 386 D 386
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 108 bits (259), Expect = 9e-25
Identities = 48/82 (58%), Positives = 59/82 (71%)
Frame = +3
Query: 9 QKKAHIMEIQLNGGTIEDKVKWAREHLEXPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSR 188
QKKAH+MEIQ+NGG++ DKV+WAREH E + + S F Q+EMID I +R
Sbjct: 173 QKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTAR 232
Query: 189 WHTKKLPRKTHKGLRKVACIXA 254
W TK+LPRKTH+GLRKVACI A
Sbjct: 233 WGTKRLPRKTHRGLRKVACIGA 254
Score = 104 bits (249), Expect = 1e-23
Identities = 50/85 (58%), Positives = 59/85 (69%)
Frame = +2
Query: 251 SWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSIT 430
+WHP+ V +TVARAG GY HRT++N KIYRIG G D K NAST++D +EK IT
Sbjct: 254 AWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAG---DDAK----NASTDFDATEKRIT 306
Query: 431 PMGGFPHYGEVNNDFVMIKGCCMGP 505
PMGGF YG V NDFVM+ G GP
Sbjct: 307 PMGGFVRYGVVENDFVMLNGATPGP 331
Score = 85.0 bits (201), Expect = 9e-18
Identities = 39/61 (63%), Positives = 47/61 (77%)
Frame = +1
Query: 487 GLLHGT*KRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQMPADKAAFMGTLKK 666
G G KR++TLRKSL HT R ALE ++LK+IDT+SKFGHGRFQ PA+ F+GTLKK
Sbjct: 326 GATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKK 385
Query: 667 D 669
D
Sbjct: 386 D 386
>SPBC685.09 |orc2|orp2|origin recognition complex subunit
Orc2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 29.1 bits (62), Expect = 0.66
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = -3
Query: 379 NFAILFVDSLSNTIDFLVHFSTVMITFLTSTSY 281
NFA+L+ SL ++ +F++H +T + T+Y
Sbjct: 377 NFALLWDTSLESSFNFVMHDATTFARYYNETTY 409
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -3
Query: 412 QIILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVMITFLTS 290
++ L RC++ F +LF S S + FL S + I + +S
Sbjct: 109 ELSLFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSS 149
>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 511
Score = 26.6 bits (56), Expect = 3.5
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 648 HGYTQEGSYSRRSCGYHNPS 707
HGY+ + R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 26.6 bits (56), Expect = 3.5
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Frame = -3
Query: 427 NGFLRQIILSRCIVFNNFAI-LFVDSLSNTIDFLVHFSTVMITFLTSTSYSERHPRRMPA 251
N FL + SRC V N+ I + V S ++F++ M+ + + + ++ R
Sbjct: 366 NSFLHNMGYSRCYVDENYHITIHVSSYERRVEFMLAVCEAMMLYGSPSHKIQQSLRIASR 425
Query: 250 XMQ--ATFL 230
+Q ATFL
Sbjct: 426 ILQLPATFL 434
>SPAC31G5.14 |gcv1|n313|glycine decarboxylase T
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 25.4 bits (53), Expect = 8.1
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +3
Query: 27 MEIQLNGGTIEDKVKWAREH 86
M +Q G TI KW REH
Sbjct: 46 MPVQYKGQTISASHKWTREH 65
>SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr
3|||Manual
Length = 334
Score = 25.4 bits (53), Expect = 8.1
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +2
Query: 47 WYHRGQSEMGQRTSGXTYPCRFC 115
++H G + G++ S Y C FC
Sbjct: 205 FHHNGLASYGEKASDVRYVCLFC 227
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,086,516
Number of Sequences: 5004
Number of extensions: 62568
Number of successful extensions: 163
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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