Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40971
         (789 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos...    27   2.3  
SPAC1002.07c |ats1||N-acetyltransferase Ats1 |Schizosaccharomyce...    26   5.4  
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom...    26   7.1  
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo...    26   7.1  
SPCC1795.02c ||SPCC895.01|CaCA proton/calcium exchanger|Schizosa...    25   9.4  
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    25   9.4  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    25   9.4  

>SPBC215.03c |csn1||COP9/signalosome complex subunit
           Csn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 422

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
 Frame = +3

Query: 225 IRFPGMDSVRAFMDLG---TAGRSYIEGRSFLNNNGETEHLDGD-FTISRILGMYS 380
           IR   +D    F D+G   +A RSY + R +  N G+  HL  +   IS  +G YS
Sbjct: 111 IRAAQLDLASFFADVGQFDSALRSYAKVREYCTNAGQIAHLSLELMRISIWIGNYS 166


>SPAC1002.07c |ats1||N-acetyltransferase Ats1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 168

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/47 (23%), Positives = 24/47 (51%)
 Frame = -3

Query: 592 QLVRQVHETQKCDNVQNARKHHIEIKIRDLK*NASVKYNIIVRINDQ 452
           Q ++++ E +KC++   A   ++E+    +     V Y + +  NDQ
Sbjct: 19  QFIKELAEFEKCEDQVEATIPNLEVAFGFIDEVTPVAYGVFIEENDQ 65


>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
 Frame = +3

Query: 282 RSYIEGRSFLNNNGETEHLDGDFTISRILGMYSVLKALALIHCTLYI--HYRPVVSMGYW 455
           R  I  R F   NG+   L  +  I   LG Y V+    +IH    +  H++ V     W
Sbjct: 151 RELIYKRGFGKINGQRIALSDNALIEEALGKYDVISIEDIIHEIYNVGSHFKEVTKF-LW 209

Query: 456 SLILT 470
              LT
Sbjct: 210 PFTLT 214


>SPBC27.02c |ask1|mug181|DASH complex subunit
           Ask1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -3

Query: 364 ILDIVKSPSKCSVSPLLLRNDLPSIYDR 281
           ++DI  SP   S SP+ ++ D+PS+ DR
Sbjct: 205 VMDIDSSPF-VSPSPISMKMDMPSLNDR 231


>SPCC1795.02c ||SPCC895.01|CaCA proton/calcium
           exchanger|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 412

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +2

Query: 557 TLLGLVYLPNKLRLFGTIPGTSGMDREVEDENVQILRQM 673
           +LLG + L N L +FG    T+G+ RE+   N+ + + M
Sbjct: 147 SLLGSI-LSNLLLVFGMCLVTTGIRREITTFNITVAQTM 184


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 578 LPNKLRLF-GTIPGTSGMDREVEDENVQILRQMGNFQTQKN 697
           L  KLR F G +   S +  E+E+ N Q +    NF + +N
Sbjct: 738 LNKKLREFEGILSSNSSLKSEIEERNNQYVTLRENFDSLQN 778


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -2

Query: 104 VYFWSVLKRKPLT*LVMQHFTCIIVFYTKIIMKF 3
           VYF S LKR   +  +   FT +I F    + +F
Sbjct: 529 VYFLSDLKRNARSFFIFYLFTIVITFCMSAVFRF 562


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,114,925
Number of Sequences: 5004
Number of extensions: 64784
Number of successful extensions: 185
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)