Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40971
         (789 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    23   4.3  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   5.7  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   7.5  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                21   9.9  

>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 9   HYNFSIKNYNAGKMLHY 59
           +YN++  NYN  K L+Y
Sbjct: 103 NYNYNNNNYNNYKKLYY 119


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 10/18 (55%), Positives = 13/18 (72%), Gaps = 2/18 (11%)
 Frame = +3

Query: 279 GRSYIEGRSFL--NNNGE 326
           GRSY +GR F+  NNN +
Sbjct: 24  GRSYGKGRGFIIQNNNND 41


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 694 KLATLKTNTSRFARIGNTESKRSAYLILGL 783
           KLA ++ N    A +  T  +++AY +L L
Sbjct: 376 KLAEMRDNYGISAGLNRTAGQQAAYQLLAL 405


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -3

Query: 592 QLVRQVHETQKCDNVQNARKH 530
           Q+  ++ +T+K  N+ N+ KH
Sbjct: 90  QVAAKIIQTEKYSNMLNSEKH 110


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,505
Number of Sequences: 438
Number of extensions: 4377
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)