Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40967
         (757 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.08 |||ribosome biogenesis protein Nsa2 |Schizosaccharom...   129   5e-31
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    29   0.54 
SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1 |Sch...    28   1.3  
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb...    28   1.7  
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    27   3.8  
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    26   5.0  
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta...    25   8.8  
SPBC16A3.16 |||mitochondrial inner membrane protein involved in ...    25   8.8  
SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism...    25   8.8  

>SPCP1E11.08 |||ribosome biogenesis protein Nsa2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 260

 Score =  129 bits (311), Expect = 5e-31
 Identities = 61/78 (78%), Positives = 66/78 (84%)
 Frame = +3

Query: 510 FERFIRPMALRFKKAHVTHPELKATFCLPIIGVKKNPSSQMYTSLGVITKGTVIEVNISE 689
           +ERFIRPMALR KKA+VTH EL  T  LPIIGVKKNP S  YT LGV+TKGTVIEVN+SE
Sbjct: 167 YERFIRPMALRQKKANVTHKELGVTMQLPIIGVKKNPQSPTYTQLGVLTKGTVIEVNVSE 226

Query: 690 LGLVTQAGKVVWGKYAQV 743
           LGLVT  GKVVWGKYAQ+
Sbjct: 227 LGLVTSGGKVVWGKYAQI 244



 Score =  122 bits (294), Expect = 6e-29
 Identities = 55/102 (53%), Positives = 79/102 (77%)
 Frame = +1

Query: 199 EKENQSARREECQTEHREGAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVPIP 378
           E+ N + R  + QT+      GA+P YLLDR+ +S+AK+LS+ +KQKRKEKA K+ VP+P
Sbjct: 69  EERNATQRGSDAQTQ------GAVPTYLLDREQESQAKMLSSAVKQKRKEKAAKYSVPLP 122

Query: 379 KVRAQADAEVFKVLKSGKSKRKAWKRMVTKVTFVGENFTRKP 504
           +VR  A+ E+FKV+++GKSK+ +WKRM+TK TFVG+ FTR+P
Sbjct: 123 QVRGVAEEEMFKVIRTGKSKKNSWKRMITKATFVGDGFTRRP 164



 Score = 69.3 bits (162), Expect = 5e-13
 Identities = 35/80 (43%), Positives = 43/80 (53%)
 Frame = +2

Query: 17  MPQNEYIERHQKLYGRRLDYXXXXXXXXXXXXXXXXXXXXXLRGIKAKIFNKERRNEKIQ 196
           MPQNEYIE   + +GRR D+                      RGIKAK++ ++RR EKIQ
Sbjct: 1   MPQNEYIEESIRKHGRRFDHEERKRKKAAREAHDASLYAQKTRGIKAKLYQEKRRKEKIQ 60

Query: 197 MKKKIKAHEEKNVKQNTEKA 256
           MKK IK HEE+N  Q    A
Sbjct: 61  MKKTIKQHEERNATQRGSDA 80


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = -1

Query: 259 RRLLCVLFDILLFVRFDFLFHLNLFIAAFLIEYF-SFDTAEFARLFSAFMRLTSF-TLPF 86
           R LL   F +L F+ F F F    F++   I YF SF    F  LF  F+ +  F +  F
Sbjct: 114 RCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSSFPILHF--LFFFFLCVCVFLSFLF 171

Query: 85  SL 80
           SL
Sbjct: 172 SL 173


>SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +3

Query: 528 PMALRFKKAHVTHPELKATFCLPIIGVKKNPSSQMYTSLGV 650
           PM   F +    HP  K  FC+P + ++  P       LGV
Sbjct: 287 PMKEEFSQYIKKHPLHKVRFCMPWLSIEDYPQVMACADLGV 327


>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 20/74 (27%), Positives = 37/74 (50%)
 Frame = +1

Query: 295 VQSRAKVLSNMIKQKRKEKAGKWDVPIPKVRAQADAEVFKVLKSGKSKRKAWKRMVTKVT 474
           +Q R +VLS ++++  K++     V  PK  +     + ++LKS     +    + T  T
Sbjct: 40  LQPRLEVLSQLLRECPKQEL---TVNGPKFHSMY-LYISEILKSKAESLRIRNSLATLQT 95

Query: 475 FVGENFTRKPPNLN 516
           F+ E   RKP ++N
Sbjct: 96  FLAELSVRKPTDVN 109


>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = -1

Query: 223 FVRFD-FLFHLNLFIAAFLIEYFSFDTAEFARLFSAFMRLTS 101
           FV  D FL+   LF    LI +F+     F  LFS F    S
Sbjct: 171 FVSVDSFLYIFTLFPIRVLISFFTLSRCIFQGLFSTFFHRNS 212


>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/50 (24%), Positives = 25/50 (50%)
 Frame = +1

Query: 388  AQADAEVFKVLKSGKSKRKAWKRMVTKVTFVGENFTRKPPNLNDSSDLWH 537
            A  +++  K+L +   K+   KR+V+++T +  N T     ++     WH
Sbjct: 883  ASENSKTEKILLAASEKKLVGKRLVSELTKLSGNITLLESEIDRYVSEWH 932


>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +2

Query: 170 KERRNEKIQMKKKIKA-HEEKNVKQNTEKAPKVPCLFIYWTGMFNLGLKY 316
           KE++N+K +  KK K   +EK  K+  + A  VP +  +  G     +K+
Sbjct: 246 KEKQNKKEKKDKKDKKDKKEKAPKEPPKAATPVPSMIDFRIGFIEKAVKH 295


>SPBC16A3.16 |||mitochondrial inner membrane protein involved in
           cytochrome c oxidase assembly Pet191
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 85

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 173 ERRNEKIQMKKKIKAHEEKNVKQNTEKAPKV 265
           E + + + M K+ +   EKN  Q+TEK   V
Sbjct: 52  ECKRQMLDMTKRYRIAPEKNTDQDTEKPSNV 82


>SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +2

Query: 17  MPQNEYIERHQKL 55
           +PQ EY+E+H+KL
Sbjct: 195 LPQTEYLEKHKKL 207


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,758,495
Number of Sequences: 5004
Number of extensions: 53630
Number of successful extensions: 189
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)