Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40965
         (629 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.04c |||guanyl-nucleotide exchange factor |Schizosaccharo...    44   1e-05
SPBC530.01 |gyp1||GTPase activating protein Gyp1 |Schizosaccharo...    29   0.73 
SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch...    29   0.73 
SPCC553.07c |mug40||DinB translesion DNA repair polymerase|Schiz...    29   0.73 
SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ...    29   0.73 
SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit 1|Schizosacchar...    25   9.0  
SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||...    25   9.0  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    25   9.0  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    25   9.0  

>SPBC4C3.04c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 100

 Score = 44.4 bits (100), Expect = 1e-05
 Identities = 15/42 (35%), Positives = 32/42 (76%), Gaps = 1/42 (2%)
 Frame = +3

Query: 279 EFYHVENMYTFENIGFTHTV-DNHKYLSCADCDAGPVGYHDT 401
           +F+ +++ + F+N+  +  + +N+K L+CADC+ GP+GY+D+
Sbjct: 45  DFFLLKDPFAFDNVSVSKPLANNYKLLACADCEKGPLGYYDS 86


>SPBC530.01 |gyp1||GTPase activating protein Gyp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 28.7 bits (61), Expect = 0.73
 Identities = 19/72 (26%), Positives = 33/72 (45%)
 Frame = +1

Query: 58  QYIMAEMENDVSPIETEQREYVEDGKNKLVVQCKFCGSKILDKKSSNYIAQEKDLPLMQQ 237
           Q  ++E   D  P+  +     E  +N +     +C SK+LD    NYI  +   P +++
Sbjct: 328 QVFLSEYIGDKDPMTYDIALLDETNRNDIEADAYWCLSKLLDGIQDNYIHAQ---PGIRR 384

Query: 238 ASNNDRKYRTRL 273
             NN R+   R+
Sbjct: 385 QVNNLRELTLRI 396


>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 505

 Score = 28.7 bits (61), Expect = 0.73
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
 Frame = -3

Query: 189 FLIQNFRTAKFALHYEFVFSVFNIFPLL-RFDWRYIIFHF----SHYVLLINYFYTYNLK 25
           FL+    T  +  +  F       F ++ R  W+YIIF F     +Y +++ Y YT  L 
Sbjct: 177 FLVYALLTLVYTPYTVFRMGFKKYFEMIFRHGWKYIIFAFFDVEGNYFVVLAYQYTNMLS 236

Query: 24  AS 19
           AS
Sbjct: 237 AS 238


>SPCC553.07c |mug40||DinB translesion DNA repair
           polymerase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 28.7 bits (61), Expect = 0.73
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 149 CNANFAVRKFWIRNHLIISLKRKIC 223
           C AN+  RKF +R+ +   + RKIC
Sbjct: 165 CTANYVARKFGVRSAMPEFIARKIC 189


>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
           Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 28.7 bits (61), Expect = 0.73
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -3

Query: 120 IFPLLRFDWRYIIFHFSHYVLLIN 49
           I+PL +  ++YIIFH++  +L IN
Sbjct: 311 IYPLSKSSFQYIIFHYAAGLLFIN 334


>SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 232

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -3

Query: 372 HNLHNSNIYDCQRCA*NLYFQMYTC 298
           HN + SN+Y+C  C   +    Y C
Sbjct: 174 HNEYESNLYECNACR-EIVIAGYVC 197


>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = -1

Query: 194 DDFLSKIFEPQNLHCTTSLFFPSSTYSLCSVSIGDTSFSIS 72
           D   S  + P   HC  +  + SS+  LC +  G  + S+S
Sbjct: 146 DMIYSHAWSPIASHCLIATAYRSSSIRLCDMQSGSYTHSLS 186


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +1

Query: 100 ETEQREYVEDGKNKLVVQCKFCGSKILDKKSSNYIAQEK 216
           E E+ E  ED +N       FC SK ++K       Q+K
Sbjct: 300 EEEEGEEKEDAQNIKERMVDFCFSKFMEKNQQRREQQDK 338


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
           Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1919

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +1

Query: 100 ETEQREYVEDGKNKLVVQCKFCGSKILDKKSSNYIAQEK 216
           E E+ E  ED +N       FC SK ++K       Q+K
Sbjct: 300 EEEEGEEKEDAQNIKERMVDFCFSKFMEKNQQRREQQDK 338


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,500,650
Number of Sequences: 5004
Number of extensions: 54166
Number of successful extensions: 145
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)