Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40965
         (629 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0136 - 12897284-12897399,12897679-12897727,12898563-128986...    30   1.7  
09_06_0001 + 20114108-20115686,20115813-20115928,20116416-201173...    29   3.0  
08_02_1187 - 25036023-25038443,25038636-25039939,25040033-25040135     29   3.0  
03_05_0243 - 22275425-22276402,22277192-22277307,22277434-22279012     29   3.0  
01_05_0645 - 23899579-23904483                                         29   3.0  
01_01_1116 + 8839946-8840048,8840142-8842064,8842192-8842307,884...    29   3.0  
09_01_0130 + 1962865-1963032,1963201-1963301,1963613-1963709           28   7.0  
05_01_0406 + 3197189-3197389,3197491-3197628,3198463-3198544,319...    28   7.0  
05_06_0094 + 25477367-25477398,25477516-25477891,25478292-254783...    27   9.3  

>01_03_0136 -
           12897284-12897399,12897679-12897727,12898563-12898661,
           12898781-12898886,12899209-12899304,12899394-12899542,
           12899629-12899904,12900229-12900317,12900921-12901013,
           12901110-12901205,12901337-12901444,12901703-12901895,
           12902608-12902639,12902997-12903066
          Length = 523

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
 Frame = -1

Query: 197 LDDFLSKIFEPQNLHCTTSLFFPSSTYSLCSVSIGD----TSFSISAIMYC*LITSTL 36
           ++D+++K+   ++LH  TS       +S+CS SI D    T FS+  I Y  LI + L
Sbjct: 339 IEDYMNKMDVQKSLHANTSGLIKDRKWSICSYSIFDNYDITVFSVLPI-YSKLIKAGL 395


>09_06_0001 +
           20114108-20115686,20115813-20115928,20116416-20117394,
           20118820-20119082
          Length = 978

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 191 DFLSKIFEPQNLHCTTSLFFPSSTYS 114
           D ++KIF+P  L  TT  ++P  TY+
Sbjct: 392 DMVNKIFKPSTLTSTTRNYYPRPTYA 417


>08_02_1187 - 25036023-25038443,25038636-25039939,25040033-25040135
          Length = 1275

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 191 DFLSKIFEPQNLHCTTSLFFPSSTYS 114
           D ++KIF+P  L  TT  ++P  TY+
Sbjct: 472 DMVNKIFKPSTLTSTTRNYYPRPTYA 497


>03_05_0243 - 22275425-22276402,22277192-22277307,22277434-22279012
          Length = 890

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 191 DFLSKIFEPQNLHCTTSLFFPSSTYS 114
           D ++KIF+P  L  TT  ++P  TY+
Sbjct: 392 DMVNKIFKPSTLTSTTRNYYPRPTYA 417


>01_05_0645 - 23899579-23904483
          Length = 1634

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 191 DFLSKIFEPQNLHCTTSLFFPSSTYS 114
           D ++KIF+P  L  TT  ++P  TY+
Sbjct: 392 DIVNKIFKPSTLTSTTRNYYPRPTYA 417


>01_01_1116 +
           8839946-8840048,8840142-8842064,8842192-8842307,
           8843340-8843763,8845187-8845452
          Length = 943

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 191 DFLSKIFEPQNLHCTTSLFFPSSTYS 114
           D ++KIF+P  L  TT  ++P  TY+
Sbjct: 541 DMVNKIFKPSTLTSTTRNYYPRPTYA 566


>09_01_0130 + 1962865-1963032,1963201-1963301,1963613-1963709
          Length = 121

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -3

Query: 93  RYIIFHFSHYVLLINYFYTY 34
           R IIFHF H  L+IN F T+
Sbjct: 72  RAIIFHFHHINLVINTFNTF 91


>05_01_0406 +
           3197189-3197389,3197491-3197628,3198463-3198544,
           3198658-3198734,3198829-3198935,3199367-3199505,
           3200602-3200718,3200850-3200941,3201096-3201162,
           3201249-3201355,3201468-3201546,3201751-3201894,
           3202095-3202235
          Length = 496

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -1

Query: 158 LHCTTSLFFPSSTYSLCSVSIGDTSF 81
           +HC TSL F S+T S  S +I  TSF
Sbjct: 337 VHCKTSLTFASTTGSFTSNAIMATSF 362


>05_06_0094 +
           25477367-25477398,25477516-25477891,25478292-25478315,
           25479069-25481828
          Length = 1063

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 402 LYHGTRLDPHHNLHNSN 352
           L+HGTR++P   L NSN
Sbjct: 689 LFHGTRVEPPSTLRNSN 705


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,286,415
Number of Sequences: 37544
Number of extensions: 283579
Number of successful extensions: 564
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)