Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40965
(629 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U74324-1|AAB18264.1| 123|Homo sapiens guanine nucleotide exchan... 68 2e-11
S78873-1|AAB34955.1| 123|Homo sapiens Mss4 protein. 68 2e-11
BT007133-1|AAP35797.1| 123|Homo sapiens RAB interacting factor ... 68 2e-11
BC037392-1|AAH37392.1| 123|Homo sapiens RAB interacting factor ... 68 2e-11
BC018488-1|AAH18488.1| 123|Homo sapiens RAB interacting factor ... 68 2e-11
AK223538-1|BAD97258.1| 123|Homo sapiens RAB-interacting factor ... 66 7e-11
>U74324-1|AAB18264.1| 123|Homo sapiens guanine nucleotide exchange
factor mss4 protein.
Length = 123
Score = 68.1 bits (159), Expect = 2e-11
Identities = 28/60 (46%), Positives = 44/60 (73%), Gaps = 1/60 (1%)
Frame = +3
Query: 267 ETIKEFYHVENMYTFENIGFTHTVDNHKYLSCADCDAGPVGYHDTNTRHS-YVAISRIVH 443
+ ++E + VE+M+ FEN+GFT V N K+L CADC+ GP+G+H + ++S YVA+ R+ H
Sbjct: 63 DLLQEHWLVEDMFIFENVGFTKDVGNIKFLVCADCEIGPIGWHCLDDKNSFYVALERVSH 122
Score = 30.7 bits (66), Expect = 4.5
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +1
Query: 88 VSPIETEQREYVEDGKNKLVVQCKFCGSKILDKKSSNYIAQEKDLPLMQQ 237
+ P E +G+N+ V C+ CGS++L ++ + ++ LP M++
Sbjct: 1 MEPAEQPSELVSAEGRNRKAVLCQRCGSRVLQPGTALFSRRQLFLPSMRK 50
>S78873-1|AAB34955.1| 123|Homo sapiens Mss4 protein.
Length = 123
Score = 68.1 bits (159), Expect = 2e-11
Identities = 28/60 (46%), Positives = 44/60 (73%), Gaps = 1/60 (1%)
Frame = +3
Query: 267 ETIKEFYHVENMYTFENIGFTHTVDNHKYLSCADCDAGPVGYHDTNTRHS-YVAISRIVH 443
+ ++E + VE+M+ FEN+GFT V N K+L CADC+ GP+G+H + ++S YVA+ R+ H
Sbjct: 63 DLLQEHWLVEDMFIFENVGFTKDVGNIKFLVCADCEIGPIGWHCLDDKNSFYVALERVSH 122
>BT007133-1|AAP35797.1| 123|Homo sapiens RAB interacting factor
protein.
Length = 123
Score = 68.1 bits (159), Expect = 2e-11
Identities = 28/60 (46%), Positives = 44/60 (73%), Gaps = 1/60 (1%)
Frame = +3
Query: 267 ETIKEFYHVENMYTFENIGFTHTVDNHKYLSCADCDAGPVGYHDTNTRHS-YVAISRIVH 443
+ ++E + VE+M+ FEN+GFT V N K+L CADC+ GP+G+H + ++S YVA+ R+ H
Sbjct: 63 DLLQEHWLVEDMFIFENVGFTKDVGNIKFLVCADCEIGPIGWHCLDDKNSFYVALERVSH 122
Score = 30.7 bits (66), Expect = 4.5
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +1
Query: 88 VSPIETEQREYVEDGKNKLVVQCKFCGSKILDKKSSNYIAQEKDLPLMQQ 237
+ P E +G+N+ V C+ CGS++L ++ + ++ LP M++
Sbjct: 1 MEPAEQPSELVSAEGRNRKAVLCQRCGSRVLQPGTALFSRRQLFLPSMRK 50
>BC037392-1|AAH37392.1| 123|Homo sapiens RAB interacting factor
protein.
Length = 123
Score = 68.1 bits (159), Expect = 2e-11
Identities = 28/60 (46%), Positives = 44/60 (73%), Gaps = 1/60 (1%)
Frame = +3
Query: 267 ETIKEFYHVENMYTFENIGFTHTVDNHKYLSCADCDAGPVGYHDTNTRHS-YVAISRIVH 443
+ ++E + VE+M+ FEN+GFT V N K+L CADC+ GP+G+H + ++S YVA+ R+ H
Sbjct: 63 DLLQEHWLVEDMFIFENVGFTKDVGNIKFLVCADCEIGPIGWHCLDDKNSFYVALERVSH 122
Score = 30.7 bits (66), Expect = 4.5
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +1
Query: 88 VSPIETEQREYVEDGKNKLVVQCKFCGSKILDKKSSNYIAQEKDLPLMQQ 237
+ P E +G+N+ V C+ CGS++L ++ + ++ LP M++
Sbjct: 1 MEPAEQPSELVSAEGRNRKAVLCQRCGSRVLQPGTALFSRRQLFLPSMRK 50
>BC018488-1|AAH18488.1| 123|Homo sapiens RAB interacting factor
protein.
Length = 123
Score = 68.1 bits (159), Expect = 2e-11
Identities = 28/60 (46%), Positives = 44/60 (73%), Gaps = 1/60 (1%)
Frame = +3
Query: 267 ETIKEFYHVENMYTFENIGFTHTVDNHKYLSCADCDAGPVGYHDTNTRHS-YVAISRIVH 443
+ ++E + VE+M+ FEN+GFT V N K+L CADC+ GP+G+H + ++S YVA+ R+ H
Sbjct: 63 DLLQEHWLVEDMFIFENVGFTKDVGNIKFLVCADCEIGPIGWHCLDDKNSFYVALERVSH 122
Score = 30.7 bits (66), Expect = 4.5
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +1
Query: 88 VSPIETEQREYVEDGKNKLVVQCKFCGSKILDKKSSNYIAQEKDLPLMQQ 237
+ P E +G+N+ V C+ CGS++L ++ + ++ LP M++
Sbjct: 1 MEPAEQPSELVSAEGRNRKAVLCQRCGSRVLQPGTALFSRRQLFLPSMRK 50
>AK223538-1|BAD97258.1| 123|Homo sapiens RAB-interacting factor
variant protein.
Length = 123
Score = 66.5 bits (155), Expect = 7e-11
Identities = 27/60 (45%), Positives = 43/60 (71%), Gaps = 1/60 (1%)
Frame = +3
Query: 267 ETIKEFYHVENMYTFENIGFTHTVDNHKYLSCADCDAGPVGYHDTNTRHS-YVAISRIVH 443
+ ++E + VE+M+ FEN+GFT V N K+L C DC+ GP+G+H + ++S YVA+ R+ H
Sbjct: 63 DLLQEHWLVEDMFIFENVGFTKDVGNIKFLVCTDCEIGPIGWHCLDDKNSFYVALERVSH 122
Score = 30.7 bits (66), Expect = 4.5
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +1
Query: 88 VSPIETEQREYVEDGKNKLVVQCKFCGSKILDKKSSNYIAQEKDLPLMQQ 237
+ P E +G+N+ V C+ CGS++L ++ + ++ LP M++
Sbjct: 1 MEPAEQPSELVSAEGRNRKAVLCQRCGSRVLQPGTALFSRRQLFLPSMRK 50
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,808,515
Number of Sequences: 237096
Number of extensions: 1710865
Number of successful extensions: 7088
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7088
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6860268620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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