Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40961
         (791 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   2.5  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    23   3.3  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    23   3.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   4.3  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    22   7.5  
AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    21   9.9  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -2

Query: 523 GGITTLILWV*H*LGASCLSAAIKSI 446
           GGI  ++L+     GA+CL ++IK++
Sbjct: 564 GGIGVVVLFAVVLAGATCLGSSIKAM 589


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = +1

Query: 340 SYKYWQKLVSNQKFYYNILSV 402
           +YK +    +++K YYNI+++
Sbjct: 310 NYKNYNNNYNSKKLYYNIINI 330


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = +1

Query: 340 SYKYWQKLVSNQKFYYNILSV 402
           +YK +    +++K YYNI+++
Sbjct: 321 NYKNYNNNYNSKKLYYNIINI 341


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 13  SCSATGSSTPSDISTPTRRARTLSGRT**IPVRR 114
           S + TG +TPS +   +     ++  T  IP RR
Sbjct: 232 SATGTGPATPSAVVATSNATAAMTTGTTTIPTRR 265



 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +1

Query: 271 CVLCPDAELPTSPTRPTAPDTHTS 342
           C  C D +LP     P +P + +S
Sbjct: 427 CYFCLDGKLPHDDQPPLSPQSDSS 450


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 38  HLPTFPPRPDGLVHFLDVHDEFPFEE 115
           H+PT PP P  +   L+ +   P E+
Sbjct: 102 HIPTAPPIPPEIQRALEWNAAHPEED 127


>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +3

Query: 243 TAEKRRIKSLCTL 281
           T + R++KS+CTL
Sbjct: 75  TVDGRKVKSVCTL 87


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 238,692
Number of Sequences: 438
Number of extensions: 5756
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)