Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40959
         (592 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   3.6  
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    26   3.6  
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    25   6.2  
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb...    25   6.2  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    25   8.3  

>SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 368

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -1

Query: 403 GISVMPTGILPGRASSTVTFIKFIGLMLFEKASN 302
           G + +P+G L   +SS  +  K  G  LFE ASN
Sbjct: 190 GAASLPSGGLSNLSSSLRSSSKSAGFSLFESASN 223


>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 822

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = +3

Query: 243 PFTHMEGCVNLQLS-TKNVGIFEA--FSNSIKPINLINVTVELALPGKI 380
           PF+   G   + L+ T +V    +  FSN +   N++NVTV +  PG I
Sbjct: 669 PFSQFLGSYRIPLNDTVDVTTLPSIKFSNKVVKDNVVNVTVTVEHPGLI 717


>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = -2

Query: 591 YWRS*CLYCTKNWQVVNSGLLRND-LFI 511
           YWR        NWQ  ++GL  ND LFI
Sbjct: 711 YWRLGVQMVALNWQTYDTGLQINDALFI 738


>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 730

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +3

Query: 402 PFEMPLRARQAVSPGYPGLLETYHG 476
           P+  P  +   ++P Y G L  YHG
Sbjct: 518 PYLQPYNSASQLAPSYVGSLPQYHG 542


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -2

Query: 576 CLYCTKNWQVVNSGLLRNDLFIFPLVCTL 490
           C  CTK++ + N  L +N +  F   C++
Sbjct: 574 CQKCTKHYVLENDSLYKNRVLPFTYCCSI 602


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,382,297
Number of Sequences: 5004
Number of extensions: 47475
Number of successful extensions: 86
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)