Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40959
         (592 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D87343-1|BAA23225.1|  297|Homo sapiens DCRA protein.                  108   2e-23
BC110655-1|AAI10656.1|  297|Homo sapiens Down syndrome critical ...   108   2e-23
AJ001867-1|CAA05058.1|  254|Homo sapiens hypothetical protein pr...   105   1e-22

>D87343-1|BAA23225.1|  297|Homo sapiens DCRA protein.
          Length = 297

 Score =  108 bits (259), Expect = 2e-23
 Identities = 53/84 (63%), Positives = 61/84 (72%)
 Frame = +3

Query: 255 MEGCVNLQLSTKNVGIFEAFSNSIKPINLINVTVELALPGKIPVGITEIPFEMPLRARQA 434
           MEG VNLQLS K+VG+FEAF NS+KPI +IN T+E+  PGK P G TEIPFE PL  +  
Sbjct: 43  MEGTVNLQLSAKSVGVFEAFYNSVKPIQIINSTIEMVKPGKFPSGKTEIPFEFPLHLK-- 100

Query: 435 VSPGYPGLLETYHGVFVNIMYTLK 506
              G   L ETYHGVFVNI YTL+
Sbjct: 101 ---GNKVLYETYHGVFVNIQYTLR 121



 Score = 42.7 bits (96), Expect = 0.001
 Identities = 18/42 (42%), Positives = 27/42 (64%)
 Frame = +1

Query: 130 MSINLSICLKRASKIYHEGEIIAGXXXXXXXXDVRHEGLSLT 255
           M   L I +KRA+K+YH GE+++G         V+H+G+SLT
Sbjct: 1   MGTALDIKIKRANKVYHAGEVLSGVVVISSKDSVQHQGVSLT 42


>BC110655-1|AAI10656.1|  297|Homo sapiens Down syndrome critical
           region gene 3 protein.
          Length = 297

 Score =  108 bits (259), Expect = 2e-23
 Identities = 53/84 (63%), Positives = 61/84 (72%)
 Frame = +3

Query: 255 MEGCVNLQLSTKNVGIFEAFSNSIKPINLINVTVELALPGKIPVGITEIPFEMPLRARQA 434
           MEG VNLQLS K+VG+FEAF NS+KPI +IN T+E+  PGK P G TEIPFE PL  +  
Sbjct: 43  MEGTVNLQLSAKSVGVFEAFYNSVKPIQIINSTIEMVKPGKFPSGKTEIPFEFPLHLK-- 100

Query: 435 VSPGYPGLLETYHGVFVNIMYTLK 506
              G   L ETYHGVFVNI YTL+
Sbjct: 101 ---GNKVLYETYHGVFVNIQYTLR 121



 Score = 42.7 bits (96), Expect = 0.001
 Identities = 18/42 (42%), Positives = 27/42 (64%)
 Frame = +1

Query: 130 MSINLSICLKRASKIYHEGEIIAGXXXXXXXXDVRHEGLSLT 255
           M   L I +KRA+K+YH GE+++G         V+H+G+SLT
Sbjct: 1   MGTALDIKIKRANKVYHAGEVLSGVVVISSKDSVQHQGVSLT 42


>AJ001867-1|CAA05058.1|  254|Homo sapiens hypothetical protein
           protein.
          Length = 254

 Score =  105 bits (252), Expect = 1e-22
 Identities = 52/84 (61%), Positives = 60/84 (71%)
 Frame = +3

Query: 255 MEGCVNLQLSTKNVGIFEAFSNSIKPINLINVTVELALPGKIPVGITEIPFEMPLRARQA 434
           MEG VNLQ S K+VG+FEAF NS+KPI +IN T+E+  PGK P G TEIPFE PL  +  
Sbjct: 1   MEGTVNLQPSAKSVGVFEAFYNSVKPIQIINSTIEMVKPGKFPSGKTEIPFEFPLHLK-- 58

Query: 435 VSPGYPGLLETYHGVFVNIMYTLK 506
              G   L ETYHGVFVNI YTL+
Sbjct: 59  ---GNKVLYETYHGVFVNIQYTLR 79


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,307,988
Number of Sequences: 237096
Number of extensions: 1782714
Number of successful extensions: 3141
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3138
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6211568660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)