Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40957
         (540 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     26   0.21 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.49 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.0  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   2.6  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    22   4.6  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    22   4.6  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    22   4.6  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    22   4.6  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   6.1  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 26.2 bits (55), Expect = 0.21
 Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 8/107 (7%)
 Frame = +2

Query: 227 IDKLTSTHESELNA--NLPSEHEVHGKTT--DVPTTEFVTSYSKLPENAETSDISDLDQT 394
           + K+TS +  E  +  N   E E    T    +  T++    S LP+  ++++++DLD +
Sbjct: 480 LSKVTSNYHEEFQSLNNAVGEMEATNVTNILSMDNTQYNLDLS-LPQ-LDSTELADLDIS 537

Query: 395 TDSAILSTTSVSDEHKTVTA----AEKSPIVTTELPSMGITNILKKT 523
               + S  S+SD  K  T+    AE S I  +   +   T I   T
Sbjct: 538 LSENLSSGLSISDSTKPETSKGINAEPSNIEESNNMTDSFTRIANNT 584


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 25.0 bits (52), Expect = 0.49
 Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
 Frame = +2

Query: 317 TTEFVTSYSKLPENAETSDISDLDQTTDSAIL---STTSVSDEHKTVTAAEKSPIVTTEL 487
           TT+ V S  K  + +E  +I+D   TT+ +++    TT+++    +V +   + +  T L
Sbjct: 800 TTQPVISSRKEQKKSEEKNINDHCVTTEQSVVVTNVTTTINTPTTSVISMSGTTVPITSL 859

Query: 488 PS 493
           P+
Sbjct: 860 PA 861


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
 Frame = +2

Query: 305  TDVPTTEFVTSYSKLPENAETSDISDLDQTT--DSAILSTTSVSD-EHKTVTAAEKSPIV 475
            T     E  TS  K+P N  T + S+LD+T   D  + ++T++ + E   + A   S  V
Sbjct: 1217 TKADNAEEPTS-QKVPPNQLTHEASELDKTRRYDFWVTASTNIGEGEASKIVALAPSVRV 1275

Query: 476  TTELPS 493
              ++ S
Sbjct: 1276 PAKIAS 1281


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 185 RRRRKGPS*NRIRKIDK 235
           RRRR+ P  N + KID+
Sbjct: 409 RRRRRTPRYNSVSKIDR 425


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +1

Query: 442 NSNSS*KITNRYYRTTLYGNNKYIEE 519
           N+N      N  Y   LY N  YIE+
Sbjct: 92  NNNYKYNYNNNNYNKKLYYNINYIEQ 117


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +1

Query: 442 NSNSS*KITNRYYRTTLYGNNKYIEE 519
           N+N      N  Y   LY N  YIE+
Sbjct: 92  NNNYKYNYNNNNYNKKLYYNINYIEQ 117


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +1

Query: 442 NSNSS*KITNRYYRTTLYGNNKYIEE 519
           N+N      N  Y   LY N  YIE+
Sbjct: 92  NNNYKYNYNNNNYNKKLYYNINYIEQ 117


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +1

Query: 442 NSNSS*KITNRYYRTTLYGNNKYIEE 519
           N+N      N  Y   LY N  YIE+
Sbjct: 92  NNNYKYNYNNNNYNKKLYYNINYIEQ 117


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -1

Query: 294 CTSCSLGKFAFNSDS 250
           CT C +GKF   + S
Sbjct: 262 CTECPIGKFKHEAGS 276


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,778
Number of Sequences: 438
Number of extensions: 3079
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)