Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40948
(462 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 27 1.4
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 27 1.4
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 27 1.4
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 27 1.4
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 27 1.4
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 27 1.4
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 27 1.4
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc... 27 1.8
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 26 2.4
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 26 2.4
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 26 2.4
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 26 2.4
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ... 25 4.3
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 25 5.6
SPAC1D4.01 ||SPAC1F3.11|sequence orphan|Schizosaccharomyces pomb... 25 5.6
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po... 25 7.4
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 25 7.4
SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces pombe... 24 9.8
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 1.4
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 4/88 (4%)
Frame = -1
Query: 285 HKQTCGNNLNVGKANFIEKRRKTKQRALTITNFN----ETGQF*TQGVSYGPAVTSLPLI 118
HK+ N N+GK + +K T R L TN + + +F V L
Sbjct: 201 HKRFQPQNKNLGKESLSKKNNTTNSRNLRKTNVSRIEYSSNKFLNHTRKRYEMVLQAELP 260
Query: 117 DFVVINEASIRDLLQRGGTLKVISEATV 34
DF + SI L+ G +I+E TV
Sbjct: 261 DF----KCSIPCLIDTGAQANIITEETV 284
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 1.4
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 4/88 (4%)
Frame = -1
Query: 285 HKQTCGNNLNVGKANFIEKRRKTKQRALTITNFN----ETGQF*TQGVSYGPAVTSLPLI 118
HK+ N N+GK + +K T R L TN + + +F V L
Sbjct: 201 HKRFQPQNKNLGKESLSKKNNTTNSRNLRKTNVSRIEYSSNKFLNHTRKRYEMVLQAELP 260
Query: 117 DFVVINEASIRDLLQRGGTLKVISEATV 34
DF + SI L+ G +I+E TV
Sbjct: 261 DF----KCSIPCLIDTGAQANIITEETV 284
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 1.4
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 4/88 (4%)
Frame = -1
Query: 285 HKQTCGNNLNVGKANFIEKRRKTKQRALTITNFN----ETGQF*TQGVSYGPAVTSLPLI 118
HK+ N N+GK + +K T R L TN + + +F V L
Sbjct: 201 HKRFQPQNKNLGKESLSKKNNTTNSRNLRKTNVSRIEYSSNKFLNHTRKRYEMVLQAELP 260
Query: 117 DFVVINEASIRDLLQRGGTLKVISEATV 34
DF + SI L+ G +I+E TV
Sbjct: 261 DF----KCSIPCLIDTGAQANIITEETV 284
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 1.4
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 4/88 (4%)
Frame = -1
Query: 285 HKQTCGNNLNVGKANFIEKRRKTKQRALTITNFN----ETGQF*TQGVSYGPAVTSLPLI 118
HK+ N N+GK + +K T R L TN + + +F V L
Sbjct: 201 HKRFQPQNKNLGKESLSKKNNTTNSRNLRKTNVSRIEYSSNKFLNHTRKRYEMVLQAELP 260
Query: 117 DFVVINEASIRDLLQRGGTLKVISEATV 34
DF + SI L+ G +I+E TV
Sbjct: 261 DF----KCSIPCLIDTGAQANIITEETV 284
>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
Srb9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1223
Score = 27.1 bits (57), Expect = 1.4
Identities = 18/68 (26%), Positives = 28/68 (41%)
Frame = -1
Query: 279 QTCGNNLNVGKANFIEKRRKTKQRALTITNFNETGQF*TQGVSYGPAVTSLPLIDFVVIN 100
Q N +GK N E + + TN NET + + TS + V +N
Sbjct: 801 QLAYENCKLGKLNLSETSINERVMGFS-TNINETDNYDDNETTQSDTATSYEQLASVCVN 859
Query: 99 EASIRDLL 76
E S +++L
Sbjct: 860 ELSGKNVL 867
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 1.4
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 4/88 (4%)
Frame = -1
Query: 285 HKQTCGNNLNVGKANFIEKRRKTKQRALTITNFN----ETGQF*TQGVSYGPAVTSLPLI 118
HK+ N N+GK + +K T R L TN + + +F V L
Sbjct: 201 HKRFQPQNKNLGKESLSKKNNTTNSRNLRKTNVSRIEYSSNKFLNHTRKRYEMVLQAELP 260
Query: 117 DFVVINEASIRDLLQRGGTLKVISEATV 34
DF + SI L+ G +I+E TV
Sbjct: 261 DF----KCSIPCLIDTGAQANIITEETV 284
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 1.4
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 4/88 (4%)
Frame = -1
Query: 285 HKQTCGNNLNVGKANFIEKRRKTKQRALTITNFN----ETGQF*TQGVSYGPAVTSLPLI 118
HK+ N N+GK + +K T R L TN + + +F V L
Sbjct: 201 HKRFQPQNKNLGKESLSKKNNTTNSRNLRKTNVSRIEYSSNKFLNHTRKRYEMVLQAELP 260
Query: 117 DFVVINEASIRDLLQRGGTLKVISEATV 34
DF + SI L+ G +I+E TV
Sbjct: 261 DF----KCSIPCLIDTGAQANIITEETV 284
>SPBC685.09 |orc2|orp2|origin recognition complex subunit
Orc2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 26.6 bits (56), Expect = 1.8
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = -1
Query: 348 STLDSREHAAFHNAT*NKMHGHKQTCGNNLNVGKANFIEKRRKTK 214
++L+S + H+AT + ++ T N+L +G+AN K + K
Sbjct: 384 TSLESSFNFVMHDATTFARYYNETTYENSLGIGRANVSNKEKAIK 428
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 2.4
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 4/88 (4%)
Frame = -1
Query: 285 HKQTCGNNLNVGKANFIEKRRKTKQRALTITNFN----ETGQF*TQGVSYGPAVTSLPLI 118
HK+ N N+GK + +K T R L TN + + +F V L
Sbjct: 201 HKRFQLQNKNLGKESLSKKNNTTNSRNLRKTNVSRIEYSSNKFLNHTRKRYEMVLQAELP 260
Query: 117 DFVVINEASIRDLLQRGGTLKVISEATV 34
DF + SI L+ G +I+E TV
Sbjct: 261 DF----KCSIPCLIDTGAQANIITEETV 284
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 2.4
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 4/88 (4%)
Frame = -1
Query: 285 HKQTCGNNLNVGKANFIEKRRKTKQRALTITNFN----ETGQF*TQGVSYGPAVTSLPLI 118
HK+ N N+GK + +K T R L TN + + +F V L
Sbjct: 201 HKRFQLQNKNLGKESLSKKNNTTNSRNLRKTNVSRIEYSSNKFLNHTRKRYEMVLQAELP 260
Query: 117 DFVVINEASIRDLLQRGGTLKVISEATV 34
DF + SI L+ G +I+E TV
Sbjct: 261 DF----KCSIPCLIDTGAQANIITEETV 284
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 2.4
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 4/88 (4%)
Frame = -1
Query: 285 HKQTCGNNLNVGKANFIEKRRKTKQRALTITNFN----ETGQF*TQGVSYGPAVTSLPLI 118
HK+ N N+GK + +K T R L TN + + +F V L
Sbjct: 201 HKRFQLQNKNLGKESLSKKNNTTNSRNLRKTNVSRIEYSSNKFLNHTRKRYEMVLQAELP 260
Query: 117 DFVVINEASIRDLLQRGGTLKVISEATV 34
DF + SI L+ G +I+E TV
Sbjct: 261 DF----KCSIPCLIDTGAQANIITEETV 284
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 2.4
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 4/88 (4%)
Frame = -1
Query: 285 HKQTCGNNLNVGKANFIEKRRKTKQRALTITNFN----ETGQF*TQGVSYGPAVTSLPLI 118
HK+ N N+GK + +K T R L TN + + +F V L
Sbjct: 201 HKRFQLQNKNLGKESLSKKNNTTNSRNLRKTNVSRIEYSSNKFLNHTRKRYEMVLQAELP 260
Query: 117 DFVVINEASIRDLLQRGGTLKVISEATV 34
DF + SI L+ G +I+E TV
Sbjct: 261 DF----KCSIPCLIDTGAQANIITEETV 284
>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 797
Score = 25.4 bits (53), Expect = 4.3
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +2
Query: 38 VASDMTLRVPPRWSRSLIDASLITTKSI 121
++ DM PR+ SLIDASL TK I
Sbjct: 205 ISKDMGSYNLPRFLASLIDASLNDTKEI 232
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 25.0 bits (52), Expect = 5.6
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 4 SHSLDSTKTRHGSLRYDFKSSASLEQVSYRCLVNN 108
SH+L STK+ +G+ + SA L + +NN
Sbjct: 209 SHNLGSTKSPNGNAKESLSRSAELPSKAKPMEINN 243
>SPAC1D4.01 ||SPAC1F3.11|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 285
Score = 25.0 bits (52), Expect = 5.6
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -1
Query: 282 KQTCGNNLNVGKANFIEKRRKTKQRALTITNFNETGQF*TQGVS 151
KQT ++N NF+EK+ K ++ A + ET T+ S
Sbjct: 138 KQTNEVDINTHLLNFVEKKLKQERLAQNYSENGETNALNTKNES 181
>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 284
Score = 24.6 bits (51), Expect = 7.4
Identities = 15/70 (21%), Positives = 31/70 (44%)
Frame = -1
Query: 417 FTNEFNRELKQHSSTSN*FCIHVSTLDSREHAAFHNAT*NKMHGHKQTCGNNLNVGKANF 238
FT+EF+ +++ + C S+ D + + K K + G+ L+ K
Sbjct: 135 FTSEFSEWMQKAEEDEDRVCEDASSSDEAKREKRKKHSSKKKSKKKTSTGSALDPKKLEK 194
Query: 237 IEKRRKTKQR 208
I K++K + +
Sbjct: 195 ITKKKKKEHK 204
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 7.4
Identities = 25/88 (28%), Positives = 35/88 (39%), Gaps = 4/88 (4%)
Frame = -1
Query: 285 HKQTCGNNLNVGKANFIEKRRKTKQRALTITNFN----ETGQF*TQGVSYGPAVTSLPLI 118
HK+ N N+GK +K T R L TN + + +F V L
Sbjct: 201 HKRFQPQNKNLGKEFLPKKNNTTNSRNLRKTNISRIEYSSNKFLNHTRKRYEMVLQAELP 260
Query: 117 DFVVINEASIRDLLQRGGTLKVISEATV 34
DF + SI L+ G +I+E TV
Sbjct: 261 DF----KCSIPCLIDTGTQANIITEETV 284
>SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 590
Score = 24.2 bits (50), Expect = 9.8
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Frame = -3
Query: 310 RYIKQDAWSQTN--MWE*LECRKSKLY*KTKENKTKSINNHKF**NRTILNSGS 155
R+I D WS + E K K+ K + NHK+ ILN+G+
Sbjct: 14 RFIAMDQWSDNKDAIGMLSESLKEKVVTNEIAPALKEVKNHKYNFETEILNTGN 67
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,680,548
Number of Sequences: 5004
Number of extensions: 30479
Number of successful extensions: 88
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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