Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40945
         (663 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    37   0.002
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    35   0.009
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    31   0.15 
SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein Mud1|Schizosacch...    29   0.79 
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    27   2.4  
SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    27   3.2  
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo...    26   4.2  
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon...    26   4.2  
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...    26   5.6  
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.4  
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   7.4  
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.7  
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe...    25   9.7  
SPAC8E11.01c ||SPAC959.01|beta-fructofuranosidase|Schizosaccharo...    25   9.7  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
 Frame = -3

Query: 505  EISFTCPALSLPKLSSAESPKLPNPESWCPNPESWCPNPESWCPNPESWCPNPESCPKLP 326
            ++S   P + LP   SA++P +P P +  P      P P S  P P+S    P + P +P
Sbjct: 1016 KLSSKAPPVPLP---SADAPPIPVPSTAPP-----VPIPTSTPPVPKSSSGAPSAPPPVP 1067

Query: 325  NPESWCPN---PESCPKLPNPESRP 260
             P S  P+   P   P +P P   P
Sbjct: 1068 APSSEIPSIPAPSGAPPVPAPSGIP 1092



 Score = 31.9 bits (69), Expect = 0.085
 Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = -3

Query: 475  LPKLSSAESPKLPNPESWCPNPESWCPNPESWCPNPESWCPNPESCPKLPNPESWCPNPE 296
            +PKLSS ++P +P P +  P      P+     P P S  P P+S    P+     P P 
Sbjct: 1014 VPKLSS-KAPPVPLPSADAPPIP--VPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPS 1070

Query: 295  S-CPKLPNPESRP 260
            S  P +P P   P
Sbjct: 1071 SEIPSIPAPSGAP 1083


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 35.1 bits (77), Expect = 0.009
 Identities = 26/76 (34%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
 Frame = -3

Query: 478 SLPKLSSAESPKLPNPESWCPNPESWCPNPESWCPNPESWCPNPESCPKLPNPESWCPNP 299
           S P   + +S   P P S  P P    P+P S  P P    P P S P    P +   +P
Sbjct: 126 SAPAPPTPQSELRP-PTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSP 184

Query: 298 ESCPKLPN--PESRPK 257
            S P LP+  P   PK
Sbjct: 185 PSAPSLPSAVPPMPPK 200



 Score = 32.7 bits (71), Expect = 0.049
 Identities = 23/69 (33%), Positives = 29/69 (42%)
 Frame = -3

Query: 463 SSAESPKLPNPESWCPNPESWCPNPESWCPNPESWCPNPESCPKLPNPESWCPNPESCPK 284
           +SA  P  P P    P P+S    P S  P P    P+P S P +P+     P P S P 
Sbjct: 120 ASAAPPSAPAP----PTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAP--PIPSSLPP 173

Query: 283 LPNPESRPK 257
              P +  K
Sbjct: 174 PAQPAAPVK 182


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
 Frame = -3

Query: 394  NPESWCP-NPESWCPNPESCPKLPNPESWCPNPESCPKLP-NPESRPKP 254
            +P S  P  P+S  P   S P  P P    P P S P +P  P S P P
Sbjct: 1685 HPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733



 Score = 28.7 bits (61), Expect = 0.79
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 600  PPMAVPIPPNEVAMPSRPFSILSSSIPWSA 511
            PPM+VP PP+   MP+ P S     +P S+
Sbjct: 1710 PPMSVPPPPSAPPMPAGPPSAPPPPLPASS 1739



 Score = 27.1 bits (57), Expect = 2.4
 Identities = 23/74 (31%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
 Frame = -3

Query: 436  NPESWCP-NPESWCPNPESWCPNPESWCPNPESCPKLPNPESWCPNPESCPKLPNPESRP 260
            +P S  P  P+S  P P+   P P    P P S P  P+       P S P  P P S  
Sbjct: 1685 HPVSTPPVRPQSAAP-PQMSAPTPP---PPPMSVPPPPSAPPMPAGPPSAPPPPLPASSA 1740

Query: 259  KPRTQSHDRNYRIQ 218
                   DR+  +Q
Sbjct: 1741 PSVPNPGDRSALLQ 1754


>SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein
           Mud1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 28.7 bits (61), Expect = 0.79
 Identities = 24/75 (32%), Positives = 30/75 (40%), Gaps = 3/75 (4%)
 Frame = -3

Query: 475 LPKLSSAESPKLPNPESWCPNPESWCPNPESWCPNPESWCPNPESCPKLPNPESWCPNPE 296
           +P L  +E PKL        N       P S      +  PNP+S  +L   ES  PN E
Sbjct: 223 IPFLGESEIPKLLANVEPSANAHGLGIEPAS---KASASSPNPQSGTRLGTKESVAPNNE 279

Query: 295 SC---PKLPNPESRP 260
                P L NP + P
Sbjct: 280 GSSNPPSLVNPPTDP 294


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 16/38 (42%), Positives = 25/38 (65%)
 Frame = -2

Query: 335 EATESRVVVSKSRIVPEASESGVTSKAPNPESRPKLSN 222
           +ATE+    SK+++    +ES V SKA + +SR KLS+
Sbjct: 461 QATENNNTPSKAKV---KAESKVRSKAKSDKSRAKLSS 495


>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
 Frame = -3

Query: 496 FTCP--ALSLPKLSSA--ESPKLPNPESWCPNPESWCPNPESWCPNPESW 359
           +T P  A+ +P L  A  +S   P PE++  NP+ W PN  +   +P++W
Sbjct: 403 YTVPKDAMVIPTLYGALHDSKVYPEPETF--NPDRWAPNGLAE-QSPKNW 449


>SPBC32C12.02 |ste11|aff1, stex|transcription factor
           Ste11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 468

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
 Frame = -3

Query: 499 SFTCPALSLPKLSS----AESPKLPNPESWCPNPESWCPNPESWCPNPESWCPNPESCPK 332
           S  C A  +PK  S    +E     +PE       S C +P    P+  S CPN    PK
Sbjct: 259 SSNCSARRVPKFDSKGTVSEQSNSDSPELSADKVLSHC-SPIDARPSTPS-CPNASISPK 316

Query: 331 LPN 323
            PN
Sbjct: 317 TPN 319


>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
           of oxoglutarate dehydrogenase complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
 Frame = -3

Query: 469 KLSSAESPK-LPNPESWCPNPESWCPNPESWCPNPESWCPNPESCPKLPNPESWCPNPES 293
           K + A++ K L  P+     P    P P+      ES   + +  P    PE   P P+ 
Sbjct: 136 KTADADAAKDLSTPQD-SSKPIEEKPMPDLGAEQKESAPSSTKPAPDAKEPEFSSPKPKP 194

Query: 292 CPKLPNPESRPK 257
               P  +S+PK
Sbjct: 195 AKSEPVKQSKPK 206


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 99  YSFDFTASINIATAMREGLCYCKY 28
           Y+F+ TA       M+E LCY  Y
Sbjct: 198 YAFNRTADFETVREMKEKLCYVSY 221


>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 224

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 21/66 (31%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
 Frame = -3

Query: 460 SAESPKLPNPESWCPNPESWCPNPESWCPNPESWCPNPESCPKLPNPESWCP-NPESCPK 284
           S+ S  LPN  +   N     P   S   N  S  P P + P    P SW P N  +   
Sbjct: 39  SSSSSTLPNYAASSLNSR---PVSSSGSGNAYSQAPYPPARPTSQRPNSWQPGNASTMYA 95

Query: 283 LPNPES 266
            P P S
Sbjct: 96  SPPPSS 101


>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 700

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -1

Query: 606 RAPPMAVPIPPNEVAMPSRPFSILSSSIPWSANWKYPLRVRHCL 475
           R P M +P PP++  +PS P    S+++P  +N   P   R+ L
Sbjct: 24  RQPSMNLPTPPHDDGLPSIP---RSTALPNLSNRLSPYSHRNYL 64


>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 331

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/37 (35%), Positives = 14/37 (37%)
 Frame = -3

Query: 376 PNPESWCPNPESCPKLPNPESWCPNPESCPKLPNPES 266
           P PE   P     P  P PE   P     P  P PE+
Sbjct: 113 PVPEEPLPGEPPLPDEPVPEEPLPGEPPLPNEPVPET 149


>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 560

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 5/69 (7%)
 Frame = -3

Query: 448 PKLPNPESW---CPN--PESWCPNPESWCPNPESWCPNPESCPKLPNPESWCPNPESCPK 284
           P    P+ W    P   P+     PE W  +   + P+PE+      PE W  + E    
Sbjct: 262 PNAVKPDDWDEDAPRMIPDPDAVKPEDWLEDEPLYIPDPEA----QKPEDW-DDEEDGDW 316

Query: 283 LPNPESRPK 257
           +P+    PK
Sbjct: 317 IPSEIINPK 325


>SPAC8E11.01c
           ||SPAC959.01|beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/20 (45%), Positives = 14/20 (70%), Gaps = 4/20 (20%)
 Frame = -1

Query: 528 SIPWSANWKY----PLRVRH 481
           SI W++NW Y    P+R++H
Sbjct: 281 SISWASNWNYTNDVPMRMKH 300


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,313,344
Number of Sequences: 5004
Number of extensions: 48626
Number of successful extensions: 203
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)