Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40943
         (607 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   4.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   4.1  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   4.1  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   5.4  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   7.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.1  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.4  

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 66  MTDEFFYGVTLSSSHQSETW 125
           M+DE  YG+ + S  Q+ +W
Sbjct: 209 MSDELGYGLIVYSWEQNRSW 228


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +3

Query: 63  IMTDEFFYGVTLSSSHQSETWDPEAKAEYPRSNKLV 170
           + TD      ++SSS +++ W P+   E    N L+
Sbjct: 367 LRTDISSSSSSISSSEENDFWQPKPTLEDAPQNSLL 402


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 59  NHHDGRVFLWCHPFIITS 112
           +H+DGR+  W  P ++ S
Sbjct: 274 DHNDGRLRYWRTPSVVVS 291


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 167 RHSSSIVRSRCQTR*IKCDTGG 232
           +H SS   + C    ++C TGG
Sbjct: 282 QHRSSSASTTCSGHTVRCFTGG 303


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -2

Query: 336 VTGASGNSMSRRTCLDSPTFNTATGSFM 253
           VTG  GN  +    + +P   TAT  ++
Sbjct: 52  VTGIFGNITTCTVIIKNPAMQTATNYYL 79


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -2

Query: 249  LVVTWLPPVSHLIH 208
            +++TW PP+  L H
Sbjct: 1023 ILITWSPPLPELRH 1036


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -2

Query: 249  LVVTWLPPVSHLIH 208
            +++TW PP+  L H
Sbjct: 1019 ILITWSPPLPELRH 1032


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 258 FMLLVVTWLPPVSHLIHLV 202
           F LLVV  +PP S ++ L+
Sbjct: 289 FFLLVVEIIPPTSLVVPLL 307


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 258 FMLLVVTWLPPVSHLIHLV 202
           F LLVV  +PP S ++ L+
Sbjct: 289 FFLLVVEIIPPTSLVVPLL 307


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,258
Number of Sequences: 438
Number of extensions: 2924
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)