Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40941
(787 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr 1|... 62 1e-10
SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr 3|||Ma... 34 0.027
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom... 33 0.061
SPAC17H9.11 |||cofilin/tropomyosin family protein|Schizosaccharo... 29 0.57
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun... 27 3.0
SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 5.3
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy... 26 7.0
SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr... 25 9.3
>SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 137
Score = 61.7 bits (143), Expect = 1e-10
Identities = 27/57 (47%), Positives = 38/57 (66%)
Frame = +1
Query: 283 KQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEKL 453
+ K+ +SW PD A +K KM+YSSS D L+++ G+ IQATD SE + E V EK+
Sbjct: 78 RNKIIFISWSPDVAPIKSKMVYSSSKDTLRRAFTGIGTDIQATDFSEVAYETVLEKV 134
Score = 52.4 bits (120), Expect = 7e-08
Identities = 27/71 (38%), Positives = 40/71 (56%)
Frame = +2
Query: 35 SGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGTG 214
SGV VS C ++E+K K RYVVF + D K V + +++ FL DL +
Sbjct: 4 SGVKVSPECLEAFQELKLGKSLRYVVFKMNDTKTEIVVEKKSTDKDFDTFLGDLPE---K 60
Query: 215 ECRYGLFDFEY 247
+CRY ++DFE+
Sbjct: 61 DCRYAIYDFEF 71
>SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 328
Score = 33.9 bits (74), Expect = 0.027
Identities = 15/27 (55%), Positives = 21/27 (77%)
Frame = +1
Query: 277 SKKQKLFLMSWCPDTAKVKKKMLYSSS 357
SKK L L+S+ P+ A V++KMLY+SS
Sbjct: 76 SKKNLLQLISYVPENANVRRKMLYASS 102
Score = 28.7 bits (61), Expect = 1.00
Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Frame = +1
Query: 289 KLFLMSWCPDTAKVKKKMLYSSS----FDALKKSL-VGVQKYIQATDLSEASQEAV 441
K+ + CP A VK +M+YSSS D++K L + + I++ D ++ +++ +
Sbjct: 244 KILFIYICPMQATVKHRMVYSSSKLGLLDSIKAELGIVIDGKIESNDAADITEKEI 299
>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 447
Score = 32.7 bits (71), Expect = 0.061
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +2
Query: 458 PPIANKQHLHTSSRRNRPALRHSCPDDTRPRHHSPLSIITKEN 586
PP++ K + S N P +RHS RP+ H S +T+++
Sbjct: 37 PPLSRKNPSNVSFWSNEPIIRHSSVKTDRPQFHRADSTVTEQS 79
>SPAC17H9.11 |||cofilin/tropomyosin family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 141
Score = 29.5 bits (63), Expect = 0.57
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = +1
Query: 265 TSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVE 444
T++ LF++ W P M+Y+S+ + + V K +A D + + EAV+
Sbjct: 79 TTDGRLSTPLFMIYWRPSATPNDLSMIYASA-KVWFQDVSQVHKVFEARDSEDITSEAVD 137
Query: 445 EKL 453
E L
Sbjct: 138 EFL 140
>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 214
Score = 27.1 bits (57), Expect = 3.0
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +1
Query: 355 SFDALKKSLVGVQKYIQATDLSEASQ 432
S +AL++ L G + Y+Q+TD++ S+
Sbjct: 188 SLEALQEELEGFEDYVQSTDIAAMSK 213
>SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 314
Score = 26.2 bits (55), Expect = 5.3
Identities = 20/74 (27%), Positives = 30/74 (40%)
Frame = +1
Query: 265 TSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVE 444
T A+K + P T K + ++ A KK + G +KY + S + E
Sbjct: 130 TGRATKSNAGVMDVQSPSTMSTSKNNVRNAERPASKKPVFGSKKYFDVINDSNVENKE-E 188
Query: 445 EKLRATDRQ*TAFT 486
K R DR + FT
Sbjct: 189 TKDRNLDRALSKFT 202
>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 596
Score = 25.8 bits (54), Expect = 7.0
Identities = 21/70 (30%), Positives = 30/70 (42%)
Frame = +3
Query: 198 RRAVPGNADMACLTLNTRIVPGHVGG*QETEALPDVVVPGHRQGQEEDVVL*LVRRSEKV 377
R AV N + L R PG +E VV+ GH +G E+D++ V R KV
Sbjct: 9 RNAVKENEMVIDTPLEKRRTPGKPRATREPPI--SVVITGHSKGSEDDLIS-FVWRKVKV 65
Query: 378 PCRSSEVHPS 407
+ P+
Sbjct: 66 RLMNISYSPA 75
>SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 319
Score = 25.4 bits (53), Expect = 9.3
Identities = 14/61 (22%), Positives = 31/61 (50%)
Frame = +2
Query: 62 KTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGTGECRYGLFDF 241
K + + ++ + K ++ +D K+ D + + + EY F ++L+ TG+ Y DF
Sbjct: 108 KCSSDFLEANVKSQFTTCENKDSKE-DYQILHNKRLEYVSFNDELKSLETGQPLYCFQDF 166
Query: 242 E 244
+
Sbjct: 167 Q 167
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,154,296
Number of Sequences: 5004
Number of extensions: 63220
Number of successful extensions: 198
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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