Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40936
         (629 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|...   130   2e-31
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ...   130   2e-31
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L...   130   2e-31
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom...    32   0.079
SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces...    29   0.55 
SPAC3F10.10c |map3||pheromone M-factor receptor |Schizosaccharom...    27   1.7  
SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces...    27   2.2  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    26   5.2  
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    26   5.2  
SPCC645.13 |||transcription elongation regulator|Schizosaccharom...    25   9.0  

>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
           ribosomal protein L8|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 253

 Score =  130 bits (314), Expect = 2e-31
 Identities = 57/82 (69%), Positives = 68/82 (82%)
 Frame = +3

Query: 264 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNP 443
           +YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK GDRG L R+SGN+  ++GH+ 
Sbjct: 81  MYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDV 140

Query: 444 DAKRTRVKLPSGAKKVLPSSNR 509
           D  +TRVKLPSGAKKV+PSS R
Sbjct: 141 DTGKTRVKLPSGAKKVVPSSAR 162



 Score =  115 bits (276), Expect = 7e-27
 Identities = 52/83 (62%), Positives = 68/83 (81%)
 Frame = +2

Query: 23  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 202
           MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59

Query: 203 VHFRDPYKFKTRKELFIVPKALH 271
           V FR+PY ++T  E F+  + ++
Sbjct: 60  VAFRNPYHYRTDVETFVATEGMY 82



 Score = 82.2 bits (194), Expect = 6e-17
 Identities = 34/41 (82%), Positives = 39/41 (95%)
 Frame = +2

Query: 506 QGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVA 628
           +G+VGIVAGGGRIDKP+LKAGRA+HKY+VKRNCWP  RGVA
Sbjct: 162 RGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVA 202


>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
           L8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 253

 Score =  130 bits (314), Expect = 2e-31
 Identities = 57/82 (69%), Positives = 68/82 (82%)
 Frame = +3

Query: 264 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNP 443
           +YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK GDRG L R+SGN+  ++GH+ 
Sbjct: 81  MYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDV 140

Query: 444 DAKRTRVKLPSGAKKVLPSSNR 509
           D  +TRVKLPSGAKKV+PSS R
Sbjct: 141 DTGKTRVKLPSGAKKVVPSSAR 162



 Score =  115 bits (276), Expect = 7e-27
 Identities = 52/83 (62%), Positives = 68/83 (81%)
 Frame = +2

Query: 23  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 202
           MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59

Query: 203 VHFRDPYKFKTRKELFIVPKALH 271
           V FR+PY ++T  E F+  + ++
Sbjct: 60  VAFRNPYHYRTDVETFVATEGMY 82



 Score = 82.2 bits (194), Expect = 6e-17
 Identities = 34/41 (82%), Positives = 39/41 (95%)
 Frame = +2

Query: 506 QGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVA 628
           +G+VGIVAGGGRIDKP+LKAGRA+HKY+VKRNCWP  RGVA
Sbjct: 162 RGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVA 202


>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
           L8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 253

 Score =  130 bits (314), Expect = 2e-31
 Identities = 57/82 (69%), Positives = 68/82 (82%)
 Frame = +3

Query: 264 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNP 443
           +YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK GDRG L R+SGN+  ++GH+ 
Sbjct: 81  MYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDV 140

Query: 444 DAKRTRVKLPSGAKKVLPSSNR 509
           D  +TRVKLPSGAKKV+PSS R
Sbjct: 141 DTGKTRVKLPSGAKKVVPSSAR 162



 Score =  115 bits (276), Expect = 7e-27
 Identities = 52/83 (62%), Positives = 68/83 (81%)
 Frame = +2

Query: 23  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 202
           MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59

Query: 203 VHFRDPYKFKTRKELFIVPKALH 271
           V FR+PY ++T  E F+  + ++
Sbjct: 60  VAFRNPYHYRTDVETFVATEGMY 82



 Score = 82.2 bits (194), Expect = 6e-17
 Identities = 34/41 (82%), Positives = 39/41 (95%)
 Frame = +2

Query: 506 QGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVA 628
           +G+VGIVAGGGRIDKP+LKAGRA+HKY+VKRNCWP  RGVA
Sbjct: 162 RGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVA 202


>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 595

 Score = 31.9 bits (69), Expect = 0.079
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = -2

Query: 553 RFVNTSTSSNNT-DHALLLDGRTFLAPDGSFTLVRLASGLCPITVAKF 413
           RF+N +T+S++T    LLLD    +    S  +V +ASG+ P+   KF
Sbjct: 120 RFINVATNSSDTVQRPLLLDLPDIVIATPSRCVVHVASGVLPLDKLKF 167


>SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 287

 Score = 29.1 bits (62), Expect = 0.55
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
 Frame = -2

Query: 565 SFQNRFVNTSTSSNNTDHALLLDGRTFLAPDGSFTLV----RLASGLCPITVAKFPEARA 398
           SF+  + NT+T   N +  + LDGR   +P G    V     L + L  +   + P    
Sbjct: 37  SFRRFWKNTATKIQNGEVLIQLDGRNLKSPSGKIVKVPKEMELLAHLIALEWDRLPSTSV 96

Query: 397 RRPLSPIFS 371
           R+   PI S
Sbjct: 97  RQHNLPITS 105


>SPAC3F10.10c |map3||pheromone M-factor receptor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 365

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -3

Query: 567 PAFKIGLSIRPPPATIPTMPCCLMAEPSWLQTVALLLYA 451
           P  K+GL+   PP  +  M         W + VAL+L++
Sbjct: 255 PTTKVGLNDWVPPTVLYLMSLFFSTSGGWTEKVALILWS 293


>SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 147

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 542 IDKPILKAGRAYHKYKVKRNCWPYVRG 622
           ++KPI        K+K K +CW  +RG
Sbjct: 68  VEKPIPVTKEELAKHKTKEDCWIAIRG 94


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 14/51 (27%), Positives = 21/51 (41%)
 Frame = -3

Query: 618  RTYGQQLRLTLYLWYALPAFKIGLSIRPPPATIPTMPCCLMAEPSWLQTVA 466
            R Y   LR   Y+    P F+   S  P PA +  +   +    +W Q +A
Sbjct: 1211 RVYSHNLRNITYILLEAPVFRKQTSAEPYPARMDDLSSAIFYS-AWNQCIA 1260


>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
           Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 391 PLSPIFSSRLHTMVPSGIAPTGITFPTSRVAFF 293
           P++P+F SR H   P G+  T   FP     F+
Sbjct: 11  PINPVFPSRAHPSPPLGL--TSNLFPIQTNKFY 41


>SPCC645.13 |||transcription elongation
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 44  QRKGAGSVFVSHTKKRKGAPKLRSLD 121
           +R+G+     +HTK+ K APK    D
Sbjct: 167 KRRGSVGTTATHTKRSKNAPKTSPKD 192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,779,225
Number of Sequences: 5004
Number of extensions: 59803
Number of successful extensions: 184
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)