Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40935
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar...    65   1e-11
SPAC4G9.20c |||mitochondrial carrier with solute carrier repeats...    39   5e-04
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz...    38   0.002
SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|c...    38   0.002
SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo...    37   0.002
SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|c...    32   0.063
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ...    32   0.083
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil...    30   0.25 
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce...    27   1.8  
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha...    27   3.1  
SPCC18B5.05c |||phosphomethylpyrimidine kinase |Schizosaccharomy...    26   5.5  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    25   9.5  

>SPBC530.10c |anc1||adenine nucleotide carrier
           Anc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 64.9 bits (151), Expect = 1e-11
 Identities = 35/84 (41%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
 Frame = +3

Query: 6   YDTARGM-LPDPKNTPIVISWAIAQTVTTVAGIISYPFDTVRRRMMMQSGRAKSDILYKN 182
           YDT + + L  P     + S+ +   VTT +G+ SYP DT+RRRMMM SG A   + Y +
Sbjct: 216 YDTLKPVVLVGPLEGNFLASFLLGWAVTTGSGVASYPLDTIRRRMMMTSGEA---VKYSS 272

Query: 183 TIHCWATIAKTEGTSAFFKGAFSN 254
           +  C   I   EG  +FFKGA +N
Sbjct: 273 SFECGRQILAKEGARSFFKGAGAN 296


>SPAC4G9.20c |||mitochondrial carrier with solute carrier
           repeats|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 39.1 bits (87), Expect = 5e-04
 Identities = 18/48 (37%), Positives = 28/48 (58%)
 Frame = +3

Query: 99  IISYPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSAFFKG 242
           ++  PFD V+ R+  QS  +    +Y N + C   I+K EG +AF+KG
Sbjct: 33  LVGQPFDCVKVRLQSQSNVSP---IYNNALDCVKKISKNEGLAAFYKG 77


>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 298

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
 Frame = +3

Query: 42  NTPIVISWAIAQTVTTVAGIIS-YPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTE 218
           N P  +++A A  V  ++ +++ YP D V+ RM +  G  KSD  Y  T  C   I K E
Sbjct: 5   NIPFPVTFA-AGAVAGISEVLTLYPLDVVKTRMQLSVG--KSD--YNGTFDCLKKIVKNE 59

Query: 219 GTSAFFKG 242
           G    ++G
Sbjct: 60  GPHRLYRG 67



 Score = 29.5 bits (63), Expect = 0.44
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +3

Query: 69  IAQTVTTVAG-IISYPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSAFFKG 242
           IA T+  + G  +S PFD ++ R+      A     Y        T+A+ EG +A +KG
Sbjct: 204 IAGTIGGIFGTFLSTPFDVIKSRIQTVPRIAGQVPKYNWAYPALVTVAREEGFTALYKG 262


>SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 303

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 16/50 (32%), Positives = 28/50 (56%)
 Frame = +3

Query: 87  TVAGIISYPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSAFF 236
           T++     PFD +++RM + S +      YK+ +HC  T+ + EG  AF+
Sbjct: 125 TISDAFMTPFDVIKQRMQLPSRK------YKSALHCATTVFRNEGLGAFY 168


>SPAC19G12.05 |||mitochondrial citrate
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 291

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 23/73 (31%), Positives = 34/73 (46%)
 Frame = +3

Query: 27  LPDPKNTPIVISWAIAQTVTTVAGIISYPFDTVRRRMMMQSGRAKSDILYKNTIHCWATI 206
           LP  +    V ++ +      +    + P DTV+ RM  QS  A  +  YKN+IHC   I
Sbjct: 195 LPPDEKLSTVTTFLVGSVAGIITVYCTQPIDTVKSRM--QSLSASKE--YKNSIHCAYKI 250

Query: 207 AKTEGTSAFFKGA 245
              +G   F+ GA
Sbjct: 251 LTQDGLLRFWSGA 263


>SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 320

 Score = 32.3 bits (70), Expect = 0.063
 Identities = 19/43 (44%), Positives = 23/43 (53%)
 Frame = +3

Query: 114 FDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSAFFKG 242
           FDTV  RM  Q    K+  LYKN I C     ++EG  A +KG
Sbjct: 250 FDTVMTRMYNQ----KNKELYKNPIDCILKTIRSEGFFALYKG 288


>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 31.9 bits (69), Expect = 0.083
 Identities = 19/58 (32%), Positives = 29/58 (50%)
 Frame = +3

Query: 102 ISYPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSAFFKGAFSNSSEVLVV 275
           +++P D +RRR  +          YKN       I KTEG + FF+G  SN  +++ V
Sbjct: 243 LTFPADVLRRRFQVNRIPGIGHN-YKNIKSAIFHIYKTEGINGFFRGYSSNMLKIIPV 299


>SPBC12D12.05c |||mitochondrial carrier, calcium binding
           subfamily|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 19/79 (24%), Positives = 29/79 (36%)
 Frame = +3

Query: 30  PDPKNTPIVISWAIAQTVTTVAGIISYPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIA 209
           P     P  +  A      +    I +P + +R R+  Q G +     Y   I C+    
Sbjct: 328 PQDVKLPNGLVMAFGALSGSTGATIVFPLNVIRTRLQTQ-GTSAHPATYDGFIDCFYKTT 386

Query: 210 KTEGTSAFFKGAFSNSSEV 266
           K EG    +KG   N  +V
Sbjct: 387 KNEGFRGLYKGLSPNLLKV 405


>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 174 YKNTIHCWATIAKTEGTSAFFKGAF 248
           Y NT   +  I K EG +AF++G F
Sbjct: 230 YNNTFDAFRKIYKYEGLAAFYRGLF 254


>SPAC17H9.08 |||mitochondrial coenzyme A
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +3

Query: 102 ISYPFDTVRRRMMMQSGRA-KSDILYKNTIHCWATIAKTEGTSAFFKG 242
           +SYPF+  RR+M +   R  KS +  K  +    T  K  G   FF G
Sbjct: 253 VSYPFEVCRRKMQIGGIRKNKSFLRLKQVVQ---TTYKEAGMRGFFVG 297


>SPCC18B5.05c |||phosphomethylpyrimidine kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 327

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 21  GMLPDPKNTPIVISWAIAQTVTTV 92
           GMLPDPK+ P++        +T V
Sbjct: 89  GMLPDPKSIPVISQALTKYKITDV 112


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
 Frame = +1

Query: 349 LCDSVSQPL-----PSNHVLLDTKTTLVTYF*LNKVLYNDSIIYCFIK 477
           LC S+S P      P NH+LL+     ++    NK   N ++ Y  I+
Sbjct: 573 LCSSLSSPRFLFRNPRNHLLLEYLLQAISSIVENKFSQNPNLSYSIIR 620


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,309,083
Number of Sequences: 5004
Number of extensions: 39758
Number of successful extensions: 110
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)