Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40935
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   161   5e-42
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   161   5e-42
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   7.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   7.9  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  161 bits (391), Expect = 5e-42
 Identities = 72/84 (85%), Positives = 78/84 (92%)
 Frame = +3

Query: 3   FYDTARGMLPDPKNTPIVISWAIAQTVTTVAGIISYPFDTVRRRMMMQSGRAKSDILYKN 182
           FYDTARGMLPDPK TP +ISW IAQ VTTVAGI+SYPFDTVRRRMMMQSGRAKS+ILYK+
Sbjct: 196 FYDTARGMLPDPKKTPFLISWGIAQVVTTVAGIVSYPFDTVRRRMMMQSGRAKSEILYKS 255

Query: 183 TIHCWATIAKTEGTSAFFKGAFSN 254
           T+HCWATI KTEG +AFFKGAFSN
Sbjct: 256 TLHCWATIYKTEGGNAFFKGAFSN 279



 Score = 29.1 bits (62), Expect = 0.039
 Identities = 14/56 (25%), Positives = 27/56 (48%)
 Frame = +3

Query: 108 YPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSAFFKGAFSNSSEVLVV 275
           YP D  R R+    G+A  +  +    +C   I K +G +  ++G F  S + +++
Sbjct: 134 YPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRG-FGVSVQGIII 188



 Score = 27.5 bits (58), Expect = 0.12
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = +3

Query: 66  AIAQTVTTVAGIISYPFDTVRRRMMMQ--SGRAKSDILYKNTIHCWATIAKTEGTSAFFK 239
           A A + TTVA     P + V+  + +Q  S +   +  YK  I C+  I K +G  ++++
Sbjct: 20  AAAISKTTVA-----PIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWR 74

Query: 240 GAFSN 254
           G  +N
Sbjct: 75  GNLAN 79



 Score = 25.0 bits (52), Expect = 0.64
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = +2

Query: 275 AFVLVLYDEIKKVL 316
           A VLVLYDEIK +L
Sbjct: 287 ALVLVLYDEIKNLL 300


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  161 bits (391), Expect = 5e-42
 Identities = 72/84 (85%), Positives = 78/84 (92%)
 Frame = +3

Query: 3   FYDTARGMLPDPKNTPIVISWAIAQTVTTVAGIISYPFDTVRRRMMMQSGRAKSDILYKN 182
           FYDTARGMLPDPK TP +ISW IAQ VTTVAGI+SYPFDTVRRRMMMQSGRAKS+ILYK+
Sbjct: 196 FYDTARGMLPDPKKTPFLISWGIAQVVTTVAGIVSYPFDTVRRRMMMQSGRAKSEILYKS 255

Query: 183 TIHCWATIAKTEGTSAFFKGAFSN 254
           T+HCWATI KTEG +AFFKGAFSN
Sbjct: 256 TLHCWATIYKTEGGNAFFKGAFSN 279



 Score = 29.1 bits (62), Expect = 0.039
 Identities = 14/56 (25%), Positives = 27/56 (48%)
 Frame = +3

Query: 108 YPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSAFFKGAFSNSSEVLVV 275
           YP D  R R+    G+A  +  +    +C   I K +G +  ++G F  S + +++
Sbjct: 134 YPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRG-FGVSVQGIII 188



 Score = 27.5 bits (58), Expect = 0.12
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = +3

Query: 66  AIAQTVTTVAGIISYPFDTVRRRMMMQ--SGRAKSDILYKNTIHCWATIAKTEGTSAFFK 239
           A A + TTVA     P + V+  + +Q  S +   +  YK  I C+  I K +G  ++++
Sbjct: 20  AAAISKTTVA-----PIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWR 74

Query: 240 GAFSN 254
           G  +N
Sbjct: 75  GNLAN 79



 Score = 25.0 bits (52), Expect = 0.64
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = +2

Query: 275 AFVLVLYDEIKKVL 316
           A VLVLYDEIK +L
Sbjct: 287 ALVLVLYDEIKNLL 300


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +1

Query: 355 DSVSQPLPSNHVLLDTKTTLVTYF*LNKVLYNDSIIYCFI 474
           D+V+Q   S  + L     L +Y   N  +Y D++I C +
Sbjct: 282 DAVTQIFFSYALGLGALVALGSYNKFNNNVYKDALIVCTV 321


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +1

Query: 355 DSVSQPLPSNHVLLDTKTTLVTYF*LNKVLYNDSIIYCFI 474
           D+V+Q   S  + L     L +Y   N  +Y D++I C +
Sbjct: 335 DAVTQIFFSYALGLGALVALGSYNKFNNNVYKDALIVCTV 374


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,977
Number of Sequences: 438
Number of extensions: 2749
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)