Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40934
(665 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1281.03c |||DUF1077 family protein|Schizosaccharomyces pombe... 31 0.20
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|... 27 1.8
SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch... 26 4.2
SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyc... 26 4.2
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc... 25 7.4
SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo... 25 7.4
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 25 7.4
SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|... 25 9.8
SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|... 25 9.8
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 9.8
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 25 9.8
SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|... 25 9.8
SPAC589.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.8
>SPCC1281.03c |||DUF1077 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 193
Score = 30.7 bits (66), Expect = 0.20
Identities = 23/64 (35%), Positives = 30/64 (46%)
Frame = +2
Query: 257 SKNPKKIENESNDFPKYNGFNRSSLPYCGSETESEIYSPYSFYCSTDNIDTANHEEYQND 436
+K PKKI + S+ FP GF + SL I+S S S+ +I EE Q D
Sbjct: 18 AKKPKKIVDNSDKFPTPRGFQQKSL------VSKNIHSGNS--ASSTSIFAKREEELQKD 69
Query: 437 LTPK 448
L K
Sbjct: 70 LLLK 73
>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 732
Score = 27.5 bits (58), Expect = 1.8
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +3
Query: 69 HELVQATNDPVIHSYDDVY-HNSKYDEENCDSAKNSDSDYEYVHH 200
HE Q + H++D ++ +N K D E+ S +N D+D+ HH
Sbjct: 534 HENSQEHHHEHNHNHDHIHKYNEKCDHESI-SLQNLDNDHHCHHH 577
>SPBC9B6.11c |||CCR4/nocturin family
endoribonuclease|Schizosaccharomyces pombe|chr
2|||Manual
Length = 502
Score = 26.2 bits (55), Expect = 4.2
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +3
Query: 66 PHELVQATNDPVIHSYDDVYHNSKYDEENCDSAKNSDSDYEYVHHARSSS 215
P + Q D + S + V+ S+ +E+N + +DS+ + +SSS
Sbjct: 316 PLSICQRATDIIERSMNYVFGESELEEKNASTKTENDSNEDDKEECQSSS 365
>SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 572
Score = 26.2 bits (55), Expect = 4.2
Identities = 15/42 (35%), Positives = 18/42 (42%)
Frame = +2
Query: 341 GSETESEIYSPYSFYCSTDNIDTANHEEYQNDLTPKTTTNKL 466
GS Y YC T+ +T Y +LTP T NKL
Sbjct: 327 GSYHFPNFYKKVDEYCGTE-WETMLSRLYNKELTPSTDENKL 367
>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1050
Score = 25.4 bits (53), Expect = 7.4
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +3
Query: 120 VYHNSKYDEENCDSAKNSDSDYEYVHH 200
+Y S + EN SDS E+V H
Sbjct: 665 IYSGSSFSLENTSEESESDSKKEFVEH 691
>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 25.4 bits (53), Expect = 7.4
Identities = 15/50 (30%), Positives = 20/50 (40%)
Frame = +3
Query: 90 NDPVIHSYDDVYHNSKYDEENCDSAKNSDSDYEYVHHARSSSPECDAGMK 239
NDP+I + DV++ K D + D Y S E DA K
Sbjct: 121 NDPLIEQFKDVFNRFKADGQEKDFEDTDKGQIMYSDDEILSEGEEDALQK 170
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 25.4 bits (53), Expect = 7.4
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +1
Query: 499 KLGDNYGAVVIANHEALAQVLEQVQQSATMQPSLRGLK 612
KL D AV A+H L +VLE +Q +L LK
Sbjct: 385 KLADFAAAVSAADHRELQEVLEATNIGDRLQKALYVLK 422
>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
3|||Manual
Length = 418
Score = 25.0 bits (52), Expect = 9.8
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 257 SKNPKKIENESNDFPKYNGFNRSSLP 334
+KN +I+ E P+YN + S+LP
Sbjct: 17 TKNDNEIDLEKGPLPEYNSEDGSTLP 42
>SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|chr
3|||Manual
Length = 393
Score = 25.0 bits (52), Expect = 9.8
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 257 SKNPKKIENESNDFPKYNGFNRSSLP 334
+KN +I+ E P+YN + S+LP
Sbjct: 17 AKNDNEIDLEKGPLPEYNSEDGSTLP 42
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 25.0 bits (52), Expect = 9.8
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Frame = -1
Query: 428 DTLHGWLCQCCPSNNRSCKANIF--RIPSRYRSTA 330
+ + GW CQ C N S + + F R+P S A
Sbjct: 154 EQIEGWCCQNCDILNYSYRESCFKCRVPRNQASIA 188
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 25.0 bits (52), Expect = 9.8
Identities = 13/53 (24%), Positives = 23/53 (43%)
Frame = +2
Query: 335 YCGSETESEIYSPYSFYCSTDNIDTANHEEYQNDLTPKTTTNKLRVRKGRSVV 493
YCG+ + P FY ++D++ E + P K R+ GR ++
Sbjct: 413 YCGANLDRNGLRPCRFYLTSDDMMICASEVGTVGIEPDRIVQKGRLYPGRMLL 465
>SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|chr
3|||Manual
Length = 368
Score = 25.0 bits (52), Expect = 9.8
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 257 SKNPKKIENESNDFPKYNGFNRSSLP 334
+KN +I+ E P+YN + S+LP
Sbjct: 17 AKNDNEIDLEKGPLPEYNSEDGSTLP 42
>SPAC589.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 168
Score = 25.0 bits (52), Expect = 9.8
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Frame = +2
Query: 260 KNPKK-----IENESNDFPKYNGFNRSSLPYCGSETESEIYSPYSFYCS--TDNIDTANH 418
K PKK NE N F K GF+++S +TESE + S +D++D +
Sbjct: 107 KQPKKDGTDAFANELNLFAKKLGFSKNSFDARALDTESEDETEIEKSSSENSDSVDVDSD 166
Query: 419 EE 424
+E
Sbjct: 167 DE 168
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,541,776
Number of Sequences: 5004
Number of extensions: 50074
Number of successful extensions: 160
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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